| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1360309 = | 85 (0.910) | 6 (0.070) | 5/238 | NT | 7.2% | coding (169/606 nt) | oprH | outer membrane protein H1 |
| ? | NC_002947 | 1360333 = | 73 (0.820) | coding (193/606 nt) | oprH | outer membrane protein H1 | |||||
GCAGGAACAAGTCGTAGCTGCCAAGCAGGTTTTCCTGGCGCAACTTCAGGCCACTGTGGTCGCCAGAGACGTTGTCATAGGTCATGTAGTAGCGGCCCTGGTCGTTGATCTTGCCCAGACGCACACCCCAGGTATCGTCCTTGCCGATGATACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1360462‑1360309‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gataccTGGGGTGTGCGTCTGGGCAAGATCAACGACCAGGGCCGCTACTACATGACCTATGACAACGTCTCTGGCGACCACAGTGGCCTGAAGTTGCGCCAGGAAAACCTGCTTGGCAGCTACGACTTGT > NC_002947/1360333‑1360456 GCAGGAACAAGTCGTAGCTGCCAAGCAGGTTTTCCTGGCGCAACTTCAGGCCACTGTGGTCGCCAGAGACGTTGTCATAGGTCATGTAGTAGCGGCCCTGGTCGTTGATCTTGCCCAGACGCACACCCCAGGTATCGTCCTTGCCGATGA < 1:2188716/150‑1 GAACAAGTCGTAGCTGCCAAGCAGGTTTTCCTGGCGCAACTTCAGGCCACTGTGGTCGCCAGAGACGTTGTCATAGGTCATGTAGTAGCGGCCCTGGTCGTTGATCTTGCCCAGACGCACACCCCAGGTATCGTCCTTGCCGATGATACC > 1:1525968/1‑150 CCAGGTATCGTCCTTGCCGATGATACCTGGGGTGTGCGTCTGGGCAAGATCAACGACCAGGGCCGCTACTACATGACCTATGACAACGTCTC < 1:1801251/92‑1 CCAGGTATCGTCCTTGCCGATGATACCTGGGGTGTGCGTCTGGGCAAGATCAACGACCAGGGCCGCTACTACATGACCTATGACAACGTCTC > 2:1801251/1‑92 CAGGTATCGTCCTTGCCGATGATACCTGGGGTGTGCGTCTGGGCAAGATCAACGACCAGGGCCGCTACTACATGACCTATGACAACGTCTCTGGCGACCACAGTGGCCTGAAGTTGCGCCAGGAAAACCTGCTTGGCAGCTACGACTTGT > 1:1047507/1‑150 CAGGTATCGTCCTTGCCGATGATACCTGGGGTGTGCGTCTGGGCAAGATCAACGACCAGGGCCGCTACTACATGACCTATGACAACGTCTCTGGCGACCACAGTGGCCTGAAGTTGCGCCAGGAAAACCTGCTTGGCAGCTACGACTTGT > 1:194659/1‑150 GGTATCGTCCTTGCCGATGATACCTGGGGTGTGCGTCTGGGCAAGATCAACGACCAGGGCCGCTACTACATGACCTAT < 1:1623700/78‑1 GGTATCGTCCTTGCCGATGATACCTGGGGTGTGCGTCTGGGCAAGATCAACGACCAGGGCCGCTACTACATGACCTAT > 2:1623700/1‑78 GATACCTGGGGTGTGCGTCTGGGCAAGATCAACGACCAGGGCCGCTACTACATGACCTATGACAACGTCTCTGGCGACCACAGTGGCCTGAAGTTGCGCCAGGAAAACCTGCTTG < 1:580265/115‑1 GATACCTGGGGTGTGCGTCTGGGCAAGATCAACGACCAGGGCCGCTACTACATGACCTATGACAACGTCTCTGGCGACCACAGTGGCCTGAAGTTGCGCCAGGAAAACCTGCTTG > 2:580265/1‑115 CCTGGGGTGTGCGTCTGGGCAAGATCAACGACCAGGGCCGCTACTACATGACCTATGACAACGTCTCTGGCGACCACAGTGGCCTGAAGTTGCGCCAGGAAAACCTGCTTGGC > 1:1794091/1‑113 CCTGGGGTGTGCGTCTGGGCAAGATCAACGACCAGGGCCGCTACTACATGACCTATGACAACGTCTCTGGCGACCACAGTGGCCTGAAGTTGCGCCAGGAAAACCTGCTTGGC < 2:1794091/113‑1 CTGGGGTGTGCGTCTGGGCAAGATCAACGACCAGGGCCGCTACTACATGACCTATGACAACGTCTCTGGCGACCACAGTGGCCTGAAGTTGCGCCAGGAAAACCTGCTT < 1:954337/109‑1 CTGGGGTGTGCGTCTGGGCAAGATCAACGACCAGGGCCGCTACTACATGACCTATGACAACGTCTCTGGCGACCACAGTGGCCTGAAGTTGCGCCAGGAAAACCTGCTT > 2:954337/1‑109 GCAGGAACAAGTCGTAGCTGCCAAGCAGGTTTTCCTGGCGCAACTTCAGGCCACTGTGGTCGCCAGAGACGTTGTCATAGGTCATGTAGTAGCGGCCCTGGTCGTTGATCTTGCCCAGACGCACACCCCAGGTATCGTCCTTGCCGATGATACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1360462‑1360309‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gataccTGGGGTGTGCGTCTGGGCAAGATCAACGACCAGGGCCGCTACTACATGACCTATGACAACGTCTCTGGCGACCACAGTGGCCTGAAGTTGCGCCAGGAAAACCTGCTTGGCAGCTACGACTTGT > NC_002947/1360333‑1360456 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |