| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1371738 = | 76 (0.810) | 4 (0.050) | 4/228 | NT | 6.0% | intergenic (+5/+67) | PP_1196/rimO | hypothetical protein/ribosomal protein S12 methylthiotransferase |
| ? | NC_002947 | 1371789 = | 55 (0.650) | intergenic (+56/+16) | PP_1196/rimO | hypothetical protein/ribosomal protein S12 methylthiotransferase | |||||
ATCGATGGCGACCATGGTTTCAAGCCAGGCGACAAAGTGCGTTGCCGTGTGGTGGATGCCGACGAGTACGACATGTGGGCTGAACCCATCTAAAACGGCTGAAGCCTGCAAAGCCCCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGGGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1371897‑1371738‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggggctttGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATCGATGAACACGCTGCCGTCGATTTCCGGTGCATCGAAGAA > NC_002947/1371789‑1371933 ATCGATGGCGACCATGGTTTCAAGCCAGGCGACAAAGTGCTTTGCCGTTTGGTGGATGCCGACGAGTACGACATGTGGGCTGAACCCATCTAAAACGGCTGAAGCCTGCAAAGCCCCTGCCCCGGCGTTCTCCCTAGGGAATGACCGGCG > 2:1047131/1‑150ATCGATGGCGACCATGGTTTCAAGCCAGGCGACAAAGTGCGTTGCCGTGTGGTGGATGCCGACGAGTACGACATGTGGGCTGAACCCATCTAAAACGGCTGAAGCCTGCAAAGCCCCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCG > 1:1454979/1‑150 GGCGACCATGGTTTCAAGCCAGGCGACAAAGTGCGTTGCCGTGTGGTGGATGCCGACGAGTACGACATGTGGGCTGAACCCATCTAAAACGGCTGAAGCCTGCAAAGCCCCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGGGG < 1:1384604/150‑1 ACCATGGTTTCAAGCCAGGCGACAAAGTGCGTTGCCGTGTGGTGGATGCCGACGAGTACGACATGTGGGCTGAACCCATCTAAAACGGCTGAAGCCTGCAAAGCCCCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGGGGCTTT < 1:585075/150‑1 ACCATGGTTTCAAGCCAGGCGACAAAGTGCGTTGCCGTGTGGTGGATGCCGACGAGTACGACATGTGGGCTGAACCCATCTAAAACGGCTGAAGCCTGCAAAGCCCCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGGGGCTTT < 2:633675/150‑1 AAGTGCGTTGCCGTGTGGTGGATGCCGACGAGTACGACATGTGGGCTGAACCCATCTAAAACGGCTGAAGCCTGCAAAGCCCCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGG < 1:2078915/120‑1 AAGTGCGTTGCCGTGTGGTGGATGCCGACGAGTACGACATGTGGGCTGAACCCATCTAAAACGGCTGAAGCCTGCAAAGCCCCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGG > 2:2078915/1‑120 CCCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGGGGCTTTGCAGGCTTCAGCCGGTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCA > 2:2038112/1‑150 CCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGC > 1:570266/1‑131 CCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGC < 2:570266/131‑1 CTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATC > 2:1147067/1‑150 GCAGGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAGCGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATCGATGAACACGCTGCCGTCGATTTCCGGTGCATC < 2:45744/150‑1 GGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATCGATGAACACGCTGTCGTCGATTTCCGGTGCATCGAA < 1:1147067/150‑1 GGGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATCGATGAACACGCTCCCGTCGATTTCCGGTGCATCGAA < 2:1191835/150‑1 GGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATCGATGAACACGCTGCCGTCGATTTCCGGTGCATCGAAG > 1:442685/1‑150 GGGCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATCGATGAACACGCTGCCGTCGATTTCCGGTGCATCGAAG > 2:2179543/1‑150 GCTTTGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATCGATGAACACGCTGCCGTCGATTTCCGGTGCATCGAGGAA > 1:401582/1‑150 ATCGATGGCGACCATGGTTTCAAGCCAGGCGACAAAGTGCGTTGCCGTGTGGTGGATGCCGACGAGTACGACATGTGGGCTGAACCCATCTAAAACGGCTGAAGCCTGCAAAGCCCCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGGGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1371897‑1371738‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggggctttGCAGGCTTCAGCCGTTTTAGATGGGTTCAGCCCACATGTCGTACTCGTCGGCATCCACCACACGGCAACGCACTTTGTCGCCTGGCTTGAAACCATGGTCGCCATCGATGAACACGCTGCCGTCGATTTCCGGTGCATCGAAGAA > NC_002947/1371789‑1371933 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |