| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1575231 | 79 (0.850) | 10 (0.110) | 8/238 | NT | 12.1% | intergenic (‑175/+35) | pcaP/galP‑II | porin/porin‑like protein |
| ? | NC_002947 | = 1575253 | 70 (0.790) | intergenic (‑197/+13) | pcaP/galP‑II | porin/porin‑like protein | |||||
CTTTGTTTCACCTGTACCTGATAGTGATCAGGATAGCCTGCAGTCACCACCATCATCAGCTCAGCGAATGGCGGCAGCTCGCACTGGGCAATTCATGGCAGGGTTTTCATCACGCTGTTGCCAATGATGCCTTCAAAAGGGAGGGCGTCTGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1575077‑1575231‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcctCTTCGCGGATAAACCCGCGAATAGGCCAGACGCCCTCCCTTTTGAAGGCATCATTGGCAACAGCGTGATGAAAACCCTGCCATGAATTGCCCAGTGCGAGCTGCCGCCATTCGCTGAGCTGATGATGGTGGTGACTGCAGGCTATCCTG < NC_002947/1575253‑1575105 CTTTGTTTCACCTGTACCTGATAGTGATCAGGATAGCCTGCAGTCACCACCATCATCAGCTCAGCGAATGGCGGCAGCTCGCACTGGGCAATTCATGGCAGGGTTTTCATCACGCTGTTGCCAATGATGCCTTCAAAAGGGAGGGCGTCT > 1:2393383/1‑150 TTTGTTTCACCTGTACCTGATAGTGATCAGGATAGCCTGCAGTCACCACCATCATCAGCTCAGCGAATGGCGGCAGCTCGCACTGGGCAATTCATGGCAGGGTTTTCATCACGCTGTTGCCAATGATGCCTTCAAAAGGGAGGGCGTCTG > 1:1647514/1‑150 TTTGTTTCACCTGTACCTGATAGTGATCAGGATAGCCTGCAGTCACCACCATCATCAGCTCAGCGAATGGCGGCAGCTCGCACTGGGCAATTCATGGCAGGGTTTTCATCACGCTGTTGCCAATGATGCCTTCAAAAGGGAGGGCGTCTG > 2:818549/1‑150 TTTGTTTCACCTGTACCTGATAGTGATCAGGATAGCCTGCAGTCACCACCATCATCAGCTCAGCGAATGGCGGCAGCTCGCACTGGGCAATTCATGGCAGGGTTTTCATCACGCTGTTGCCAATGATGCCTTCAAAAGGGAGGGCGTCTG < 2:2393383/150‑1 TTTGTTTCACCTGTACCTGATAGTGATCAGGATAGCCTGCAGTCACCACCATCATCAGCTCAGCGAATGGCGGCAGCTCGCACTGGGCAATTCATGGCAGGGTTTTCATCACGCTGTTGCCAATGATGCCTTCAAAAGGGAGGGCGTCTG > 2:2192821/1‑150 TGTTTCACCTGTACCTGATAGTGATCAGGATAGCCTGCAGTCACCACCATCATCAGCTCAGCGAATGGCGGCAGCTCGCACTGGGCAATTCATGGCAGGGTTTTCATCACGCTGTTGCCAATGATGCCTTCAAAAGGGAGGGCGTCTGGC < 1:845643/150‑1 GATACTGATCAGGATAGCCTGCCGTCAACACCATCATCTGATTAGCGAATGGCGGCAGCTCGCACTGGGCAATTCATGGCAGGGTTTTCATCACGCTGTTGCCAATGATGCCTTCAAAAGGGAGGGCGTCTGGCCTATTCGCGGATAAAC < 2:982253/150‑1 CAGGATAGCCTGCAGTCACCACCATCATCAGCTCAGCGAATGGCGGCAGCTCGCACTGGGCAATTCATGGCAGGGTTTTCATCACGCTGTTGCCAATGATGCCTTCAAAAGGGAGGGCGTCTGGCCTCTTCGCGGATAAACCCGCGAATA < 1:818549/150‑1 AGGATAGCCTGCAGTCACCACCATCATCAGCTCAGCGAATGGCGGCAGCTCGCACTGGGCAATTCATGGCAGGGTTTTCATCACGCTGTTGCCAATGATGCCTTCAAAAGGGAGGGCGTCTGGCCTCTTCGCGGATAAACCCGCGAATAG < 1:2174192/150‑1 GATAGCCTGCAGTCACCACCATCATCAGCTCAGCGAATGGCGGCAGCTCGCACTGGGCAATTCATGGCAGGGTTTTCATCACGCTGTTGCCAATGATGCCTTCAAAAGGGAGGGCGTCTGGCCTCTTCGCGGATAAACCCGCGAATAGGC < 2:2234677/150‑1 ACCACCATCATCAGCTCAGCGAATGGCGGCAGCTCGCACTGGGCAATTCATGGCAGGGTTTTCATCACGCTGTTGCCAATGATGCCTTCAAAAGGGAGGGCGTCTGGC > 1:401346/1‑108 ACCACCATCATCAGCTCAGCGAATGGCGGCAGCTCGCACTGGGCAATTCATGGCAGGGTTTTCATCACGCTGTTGCCAATGATGCCTTCAAAAGGGAGGGCGTCTGGC < 2:401346/108‑1 TCAGCGAATGGCGGCAGCTCGCACTGGGCAATTCATGGCAGGGTTTTCATCACGCTGTTGCCAATGATGCCTTCAAAAGGGAGGGCGTCTGGCCTATTCGCGGATAAACCCGCGAATA < 2:165878/118‑1 TCAGCGAATGGCGGCAGCTCGCACTGGGCAATTCATGGCAGGGTTTTCATCACGCTGTTGCCAATGATGCCTTCAAAAGGGAGGGCGTCTGGCCTATTCGCGGATAAACCCGCGAATA > 1:165878/1‑118 CCAATGATGCCTTCAAAAGGGAGGGCGTCTGGCCTCTTCGCGGATAAACCCGCGAATAGG < 1:1163051/60‑1 CCAATGATGCCTTCAAAAGGGAGGGCGTCTGGCCTCTTCGCGGATAAACCCGCGAATAGG > 2:1163051/1‑60 CAATGATGCCTTCAAAAGGGAGGGCGTCTGGCCTCTTCGCGGATAAACCCGCGAATAG > 2:1776694/1‑58 CAATGATGCCTTCAAAAGGGAGGGCGTCTGGCCTCTTCGCGGATAAACCCGCGAATAG < 1:1776694/58‑1 GCCTCTTCGCGGATAAACCCGCGAATAGGCCAGACGCCCTCCCTTTTGAAGGCATCATTGGCAACAGCGTGATGAAAACCCTGCCATGAATTGCCCAGTGCGAGCTGCCGCCATTCGCTGAGCTGATGATGGTGGTGACTGCAGGCTATC < 1:1888842/150‑1 GCCTCTTCGCGGATAAACCCGCGAATAGGCCAGACGCCCTCCCTTTTGAAGGCATCATTGGCAACAGCGTGATGAAAACCCTGCCATGAATTGCCCAGTGCGAGCTGCCGCCATTCGCTGAGCTGATGATGGTGGTGACTGCAGGCTATC > 2:439182/1‑150 TCTTCGCGGATAAACCCGCGAATAGGCCAGACGCCCTCCCTTTTGAAGGCATCATTGGCAACAGCGTGATGAAAACCCTGCCATGAATTGCCCAGTGCGAGCTGCCGCCATTCGCTGAGCTGATGATGGTGGTGACTGCAGGCTATCCTG > 1:2433241/1‑150 TCTTCGCGGATAAACCCGCGAATAGGCCAGACGCCCTCCCTTTTGAAGGCATCATTGGCAACAGCGTGATGAAAACCCTGCCATGAATTGCCCAGTGCGAGCTGCCGCCATTCGCTGAGCTGATGATGGTGGTGACTGCAGGCTATCCTG > 1:569364/1‑150 CTTTGTTTCACCTGTACCTGATAGTGATCAGGATAGCCTGCAGTCACCACCATCATCAGCTCAGCGAATGGCGGCAGCTCGCACTGGGCAATTCATGGCAGGGTTTTCATCACGCTGTTGCCAATGATGCCTTCAAAAGGGAGGGCGTCTGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1575077‑1575231‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcctCTTCGCGGATAAACCCGCGAATAGGCCAGACGCCCTCCCTTTTGAAGGCATCATTGGCAACAGCGTGATGAAAACCCTGCCATGAATTGCCCAGTGCGAGCTGCCGCCATTCGCTGAGCTGATGATGGTGGTGACTGCAGGCTATCCTG < NC_002947/1575253‑1575105 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |