| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1775392 = | 78 (0.840) | 5 (0.060) | 3/242 | NT | 6.3% | coding (530/1077 nt) | PP_1582 | hypothetical protein |
| ? | NC_002947 | 1775419 = | 72 (0.800) | coding (557/1077 nt) | PP_1582 | hypothetical protein | |||||
CCGTAGTAGGCAGCCGAGGTAATCCCGGTGACCACTTTGGTACAGGTGTTGGCGATCGGGTCGTAGATGACGAATGCCTGCGCACCGTAGGGGATCAACAAAATCCGGCCATCTGGCAGCTCTTCGGCACCACTGAAATAGGTGGTCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1775542‑1775392‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGACCCGATCGCCAACACCTGTACCAAAGTGGTCACCGGGATTACCTCGGCTGCCTACTACGGGTCTGCAAAGATTCAGAACGGTGA > NC_002947/1775419‑1775566 CCGTAGTAGGCAGCCGAGGTAATCCCGGTGACCACTTTGGTACAGGTGTTGGCGATCGGGTCGTAGATGACGAATGCCTGCGCACCGTAGGGGATCAACAAAATCCGGCCATCTGGCAGCTCTTCGGCACCACTGAAATAGGTGGTCGCC > 1:1904963/1‑150 CGTAGTAGGCAGCCGAGGTAATCCCGGTGACCACTTTGGTACAGGTGTTGGCGATCGGGTCGTAGATGACGAATGCCTGCGCACCGTAGGGGATCAACAAAATCCGGCCATCTGGCAGCTCTTCGGCACCACTGAAATAGGTGGTCGCCG < 2:1152801/150‑1 CTCTTCGGCACCACTGAAATAGGTGGTCGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAG > 2:2253409/1‑79 CTCATCGGCACCACTGAAATAGGTGGTCGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAG < 1:2253409/79‑1 TCTTCGGCACCACTGAAATAGGTGGTCGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAG < 1:2052949/78‑1 TCTTCGGCACCACTGAAATAGGTGGTCGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAG > 2:2052949/1‑78 TCTTCGGCACCACTGAAATAGGTGGTCGCCGAAGAGCTGCCAGATGGCCGGAGTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGACCCGATCGCCAACACCTGTACCAAAGTGGTCACCGGGATTACCTCGGCTGCCTAC > 1:1930513/1‑150 CCGAAGAGCTGCCAGATGGCCGGATTTTGTGTATCCCCTACGGTGCGCCGGCATTCGTCATCTACGACCCGATCGCCAACACCTGTACCAAAGTGGTCACCGGGATTACCTCGGCTGCCTACTACGGGTCTGCAAAGATTCAGAACGGTG > 1:2289597/1‑150 CGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGACCCGATCGCCAACACCTGTACCAAAGTGGTCACCGGGATTACCTCGGCTGCCTACTACGGGTCTGCAAAGATTCAGAACGGTGA < 2:1925940/150‑1 CGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGACCCGATCGCCAACACCTGTACCAAAGTGGTCACCGGGATTACCTCGGCTGCCTACTACGGGTCTGCAAAGATTCAGAACGATGA > 2:1406799/1‑150 GAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGACCCGATCGCCAACACCTGTACCAAA < 1:1661583/90‑1 GAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGACCCGATCGCCAACACCTGTACCAAA > 2:1661583/1‑90 CCGTAGTAGGCAGCCGAGGTAATCCCGGTGACCACTTTGGTACAGGTGTTGGCGATCGGGTCGTAGATGACGAATGCCTGCGCACCGTAGGGGATCAACAAAATCCGGCCATCTGGCAGCTCTTCGGCACCACTGAAATAGGTGGTCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1775542‑1775392‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGACCCGATCGCCAACACCTGTACCAAAGTGGTCACCGGGATTACCTCGGCTGCCTACTACGGGTCTGCAAAGATTCAGAACGGTGA > NC_002947/1775419‑1775566 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |