New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1798642 =	106 (1.140)	6 (0.070)	5/240	NT	5.7%	coding (523/1128 nt)	lpxB	lipid‑A‑disaccharide synthase
	?	NC_002947	1798676 =	98 (1.090)					coding (557/1128 nt)	lpxB	lipid‑A‑disaccharide synthase

ACGAAGCGCACACCCGGCACTTGTTGGCTGAGGCGCTCGGCGGCGTCGAGGAACAGCGCGCCCAAGCGCCCTACTTCGCCACCCCGGCTGCCCGGCATCAACGCCACCACCGGCCCCTCGCCCAGGCCCAGCGCGGCACGCGCGGCCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1798793‑1798642 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgAGGGGCCGGTGGTGGCGTTGATGCCGGGCAGCCGGGGTGGCGAAGTAGGGCGCTTGGGCGCGCTGTTCCTCGACGCCGCCGAGCGCCTCAGCCAACAAGTGCCGGGTGTGCGCTTCGTGTTGCCCTGCGCCAACGCCACGCGGCGC  >  NC_002947/1798676‑1798821                                                                                                                                                                                                                                                                                                            ACGAAGCGCACACCCGGCACTTGTTGGCTGAGGCGCTCGGCGGCGTCGAGGAACAGCGCGCCCAAGCGCCCTACTTCGCCACCCCGGCTGCCCGGCATCAACGCCACCACCGGCCCCTCGCCCAGGCCCAGCGCGGCACGCGCGGCCGGG                                                                                                                                                      >  1:1854274/1‑150                                                                                                                    CCTCGCCCAGGCCCAGCGCGGCACGCGCGGCCGGGCGAGGGGCCGGTGGTGGCGTTGATGCCGGGCAGCCGGGGTGGCGAAGTAGGGCGCTTGGGC                                                                                         >  1:934631/1‑96                                                                                                                    CCTCGCCCAGGCCCAGCGCGGCACGCGCGGCCGGGCGAGGGGCCGGTGGTGGCGTTGATGCCGGGCAGCCGGGGTGGCGAAGTAGGGCGCTTGGGC                                                                                         <  2:934631/96‑1                                                                                                                      TCGCCCAGGCCCAGCGCGGCACGCGCGGCCGGGCGAGGGGCCGGTGGTGGCGTTGATGCCGGGCAGCCGGGGTGGCGAAGTAGGGCGCTTGGGCGCGCTGTTCCTCGACGCCGCCGAGCGCCTCAGCCAACAAGTGCCGGGTGTGCGCTT                                 >  1:1847030/1‑150                                                                                                                      TCGCCCAGGCCCAGCGCGGCACGCGCGGCCGGGCGAGGGGCCGGTGGTGGCGTTGATGCCGGGCAGCCGGGGTGGCGAAGTAGGGCGCTTGGGCGCGCTGTTCCTC                                                                             >  1:2402737/1‑106                                                                                                                      TCGCCCAGGCCCAGCGCGGCACGCGCGGCCGGGCGAGGGGCCGGTGGTGGCGTTGATGCCGGGCAGCCGGGGTGGCGAAGTAGGGCGCTTGGGCGCGCTGTTCCTC                                                                             <  2:2402737/106‑1                                                                                                                         CCCAGGCCCAGCGCGGCACGCGCGGCCGGGCGAGGGGCCGGTGGTGGCGTTGATGCCGGGCAGCCGGGGTGGCGAAGTAGGGCGCTTGGGCGCGCTGTTCCTCGACGCCGCCGAGCGCCTCAGCCAACAAGTGCCGGGTGTGCGCTTCGT                              >  2:1053807/1‑150                                                                                                                                                     GGCGAGGGGCCGGTGGTGGCGTTGATGCCGGGCAGCCGGGGTGGCGAAGTAGGGCGCTTGGGCGCGCTGTTCCTCGACGCCGCCGAGCGCCTCAGCCAACAAGTGCCGGGTGTGCGCTTCGTGTTGCCCTGCGCCAACGCCACGCGGCGC  <  1:2439941/150‑1                                                                                                                                                                                                                                                                                                            ACGAAGCGCACACCCGGCACTTGTTGGCTGAGGCGCTCGGCGGCGTCGAGGAACAGCGCGCCCAAGCGCCCTACTTCGCCACCCCGGCTGCCCGGCATCAACGCCACCACCGGCCCCTCGCCCAGGCCCAGCGCGGCACGCGCGGCCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1798793‑1798642 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgAGGGGCCGGTGGTGGCGTTGATGCCGGGCAGCCGGGGTGGCGAAGTAGGGCGCTTGGGCGCGCTGTTCCTCGACGCCGCCGAGCGCCTCAGCCAACAAGTGCCGGGTGTGCGCTTCGTGTTGCCCTGCGCCAACGCCACGCGGCGC  >  NC_002947/1798676‑1798821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.