New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1842839 = | 96 (1.030) | 7 (0.080) | 6/232 | NT | 7.7% | coding (1997/2754 nt) | gacS | sensor protein GacS |
? | NC_002947 | 1842873 = | 79 (0.910) | coding (1963/2754 nt) | gacS | sensor protein GacS |
CCGACCACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1842996‑1842839 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccagcgGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGG > NC_002947/1842873‑1843021 CCGACCACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAAC > 1:779600/1‑150 CGACCACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACG < 1:379550/150‑1 GACCACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGG > 2:645096/1‑150 ACCNCCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGC > 2:1518196/1‑150 CACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCA < 2:1179074/150‑1 ACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAG > 2:2437475/1‑150 ACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAG > 2:1956056/1‑150 TACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGC > 2:594472/1‑132 TACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGC < 1:594472/132‑1 CCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAAC > 1:1661809/1‑114 CCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCCGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAAC < 2:1661809/114‑1 CCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCA < 1:1353785/111‑1 CCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCA > 2:1353785/1‑111 CCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAG < 1:490692/135‑1 CCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAG > 2:490692/1‑135 GTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTT < 2:1436804/98‑1 GTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTT > 1:1436804/1‑98 GTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAGC‑GACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCT > 2:197414/1‑150 CGAGGGGAGCAACCCCAACGGCCAGTGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACA > 1:884177/1‑132 CGAGGGGAGCAACCCCAACGGCCAGTGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACA < 2:884177/132‑1 GCCAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGG < 2:2414402/150‑1 GCCAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGG < 1:494123/150‑1 AGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCA > 1:93166/1‑149 AGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCA < 2:93166/149‑1 CGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTG < 2:1528534/150‑1 GGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGG < 2:1527431/150‑1 GGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGG > 1:1320721/1‑150 CCGACCACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1842996‑1842839 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccagcgGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGG > NC_002947/1842873‑1843021 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |