New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2050638	32 (0.340)	17 (0.260)	9/176	NT	36.4%	intergenic (‑88/+87)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	= 2050674	37 (0.560)					intergenic (‑124/+51)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein

GTCGGCCTTGGGCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2050455‑2050638 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgcgggcctcttcgcgggtgaacccgctcctacAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGATTTTTCCCTGT  <  NC_002947/2050674‑2050526                                                                                                                                                                                                                                                                                                                                                GTCGGCCTTGGGCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCT                                                                                                                                                                                         >  1:1758345/1‑150 GTCGGCCTTGGGCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCT                                                                                                                                                                                         <  1:1852740/150‑1      CCTTGGGCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCG                                                                                                                                                                                    >  2:2048363/1‑150       CTTGGGCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGG                                                                                                                                                                                   <  2:2189915/150‑1              TTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAACCTGTGCGGGCCTCTT                                                                                                                                                                            >  1:451499/1‑150                 CCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGC                                                                                                                                                                         >  1:86112/1‑150                   GACTTCGGCACGGTCGTGGCGGATTGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGG                                                                                                                                                                       <  1:71346/150‑1                   GACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGG                                                                                                                                                                       <  2:2164363/150‑1                   GACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGG                                                                                                                                                                       <  2:1008339/150‑1                         GGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAAC                                                                                                                                                                 >  1:60618/1‑150                               GTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCATTGTACAAGGAAAAAGCGTTGGCTTGCATGATG‑CTATTTGTGTGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTC                                                                                                                                                           <  1:534304/150‑1                                  GTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTTCACCCGCgaaga                                                                                                                                                        <  1:262274/150‑6                                        GATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCA                                                                                                                                                  >  2:1739252/1‑150                                          TCGGCTTTACGCCGCGCACTTCGACCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACC                                                                                                                                                >  2:1189656/1‑150                                             GCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGC                                                                                                                                                                                 <  1:427266/114‑1                                             GCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGC                                                                                                                                                                                 >  2:427266/1‑114                                               TTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCC                                                                                                                                           >  1:786668/1‑150                                                                           GGGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAG                                                                                                               <  2:786668/150‑1                                                                            GGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAAC                                                                                                                                                                 <  2:1831587/99‑1                                                                            GGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAAC                                                                                                                                                                 <  2:1831949/99‑1                                                                            GGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAAC                                                                                                                                                                 >  1:1831949/1‑99                                                                            GGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAAC                                                                                                                                                                 >  1:1831587/1‑99                                                                                 AATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGG                                                                                                         <  1:1189656/150‑1                                                                                 AATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGG                                                                                                         <  2:330677/150‑1                                                                                 AATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGG                                                                                                         <  1:2228014/150‑1                                                                                 AATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAACCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGG                                                                                                         <  2:451499/150‑1                                                                                 AATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGCATACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGACACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGG                                                                                                         <  1:1841644/150‑1                                                                                 AATCGTCGTCTTGCATGATGCCGCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGG                                                                                                         <  2:199158/150‑1                                                                                  ATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGG                                                                                                        <  2:842811/150‑1                                                                                         TCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTGCGCGACTGTGTGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCC                                                                                                 <  1:1739252/150‑1                                                                                          CTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGG                                                                                                         >  1:864340/1‑141                                                                                          CTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGG                                                                                                         <  2:864340/141‑1                                                                                                                            TACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAG                                                                                                               <  1:278309/102‑1                                                                                                                            TACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAG                                                                                                               >  2:278309/1‑102                                                                                                                                        GGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAG                                                                                                               >  1:600207/1‑90                                                                                                                                        GGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAG                                                                                                               <  2:600207/90‑1                                                                                                                                                                 TCTTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCA                          >  1:2032396/1‑150                                                                                                                                                                   TTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATG                        >  1:1590435/1‑150                                                                                                                                                                   TTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATG                        <  2:2032396/150‑1                                                                                                                                                                   TTCGCGGGTGAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATG                        >  1:487307/1‑150                                                                                                                                                                            GAACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGAC               >  1:937674/1‑150                                                                                                                                                                              ACCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGA             >  2:2281054/1‑150                                                                                                                                                                               CCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGAT            >  1:2377300/1‑150                                                                                                                                                                               CCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGAT            >  1:1834404/1‑150                                                                                                                                                                               CCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGAT            >  1:1757995/1‑150                                                                                                                                                                               CCCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCCCACAGGCTGCACACCGCCACCCAGTCTCGTGACCTACGCCGCCTAC‑‑GGAGGCCTCATGCAAGACCACGCTTT          >  2:909545/1‑150                                                                                                                                                                                CCGCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCCTGCAAGCCGACGATT           >  2:280038/1‑150                                                                                                                                                                                  GCTCCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGATTTT         >  1:1604845/1‑150                                                                                                                                                                                     CCTACAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGATTTTTCC      <  2:937674/150‑1                                                                                                                                                                                         CAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGATTTTTCCCTGT  >  2:722500/1‑150                                                                                                                                                                                                                                                                                                                                                GTCGGCCTTGGGCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGT‑AGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2050455‑2050638 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgcgggcctcttcgcgggtgaacccgctcctacAGGCACCCCGCCGTCTTCGGGCTCTGTGACATCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCTGCACACCGCCCCACAGTCGCGTAAACTACGCCGCCTACGTGGAGGCATCATGCAAGACGACGATTTTTCCCTGT  <  NC_002947/2050674‑2050526

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.