New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2070381	NA (NA)	16 (0.180)	4/240	NT	NA	coding (712/1422 nt)	PP_1846	group II intron‑encoding maturase
	?	NC_002947	= 2070412	NA (NA)					coding (743/1422 nt)	PP_1846	group II intron‑encoding maturase

TGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2070229‑2070381 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGAT  <  NC_002947/2070412‑2070265                                                                                                                                                                                                                                                                                                               TGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCATATTTATTCGCCGCTACCGTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCAC                                                                                                                                                         <  2:684096/150‑1   GAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGG                                                                                                                                                       >  1:1471564/1‑150   GAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGG                                                                                                                                                       <  2:2106999/150‑1    AACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGC                                                                                                                                                      >  2:2117424/1‑150    AACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGC                                                                                                                                                      >  2:320063/1‑150     ACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAACCCACGGCG                                                                                                                                                     >  1:399815/1‑150             TGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCAACGGCGAAAGCGGG                                                                                                                                             <  1:1556893/150‑1                              CGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGCTTCAGCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAGAGCGGGCCGCCTTGCGGCGTCCC                                                                                                                            <  1:23109/150‑1                                GGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAG‑GGGCCGCCTTGCGGCGTCCCCTC                                                                                                                         <  1:1641253/150‑1                                     ATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGC                                                                                                                     <  2:1777481/150‑1                                      TCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCAACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCC                                                                                                                    >  1:1400266/1‑150                                          GACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGG                                                                                                                <  1:2280797/150‑1                                          GACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGG                                                                                                                <  2:668946/150‑1                                           ACATCCTGATGGCCTGTATCGAGCGCCGGGTCGAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGG                                                                                                               <  2:51718/150‑1                                             atgCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCT                                                                                                             <  1:388806/147‑1                                               CCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGA                                                                                                           <  1:113976/150‑1                                               CCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCAACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGA                                                                                                           <  2:978066/150‑1                                                CTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCAACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGAC                                                                                                          <  2:1400266/150‑1                                                 TCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCAC                                                                                                                                                         >  1:1597919/1‑102                                                 TCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCAC                                                                                                                                                         <  2:1597919/102‑1                                                               GAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCAACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGAC                                                                                                          <  2:1986954/135‑1                                                               GAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCAACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGAC                                                                                                          >  1:1986954/1‑135                                                                                             AGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGG                                                                                                                <  1:67598/99‑1                                                                                             AGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGG                                                                                                                >  2:67598/1‑99                                                                                                                                                     ACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGT     >  1:574723/1‑150                                                                                                                                                     ACGGCGAAAGCGGGCCGCCTTGCGGCGTCCAAATCTCACTTGTTCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGT     <  2:1379677/150‑1                                                                                                                                                     ACGGCAAAAGCGGGCCGCCTTGCCGCGTTCTGTCCGGCCGTGGGCTGACGACACCGCCCGACATGATCCCTGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGT     <  2:1098478/150‑1                                                                                                                                                       GGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGAGATGATCCCGGCTTCAAGTTAGCGGCGAATAAGCCTGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGA   <  1:289119/150‑1                                                                                                                                                       GGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGA   <  2:238521/150‑1                                                                                                                                                       GGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGA   <  1:337335/150‑1                                                                                                                                                       GGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTGTCTTTGATC                                    >  1:435381/1‑117                                                                                                                                                       GGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTGTCTTTGATC                                    <  2:435381/117‑1                                                                                                                                                        GCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGAT  <  2:1151713/150‑1                                                                                                                                                        GCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGAT  <  2:308865/150‑1                                                                                                                                                        GCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGAT  <  2:1449287/150‑1                                                                                                                                                        GCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTGTCTTTGA                                      <  1:2191174/114‑1                                                                                                                                                        GCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTGTCTTTGA                                      >  2:2191174/1‑114                                                                                                                                                                                                                                                                                                               TGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2070229‑2070381 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTGTCTTTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGAT  <  NC_002947/2070412‑2070265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.