New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2379610 = | 71 (0.760) | 5 (0.050) | 4/244 | NT | 6.5% | intergenic (+22/‑68) | cmpX/PP_2088 | protein CmpX/RNA polymerase sigma factor SigX |
? | NC_002947 | 2379652 = | 74 (0.810) | intergenic (+64/‑26) | cmpX/PP_2088 | protein CmpX/RNA polymerase sigma factor SigX |
CTCCTCATGCGAACGCGCCACCAACTCTTCGTCTGTGAGCTCGCGGGGGTCATAGCGCATGGGCGGCGAATGAACTTTATTCAAAACGGATCTGGCCGACAGTCAGGTCAATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCGGCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2379761‑2379610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAG > NC_002947/2379652‑2379758 CTCCTCATGCGAACGCGCCACCAACTCTTCGTCTGTGAGCTCGCGGGGGTCATAGCGCATGGGCGGCGAATGAACTTTATTCAAAACGGATCTGGCCGACAGTCAGGTCAATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCGGCGGC > 1:628994/1‑150 CTCCTCATGCGAACGCGCCACCAACTCTTCGTCTGTGAGCTCGCGGGGGTCATAGCGCATGGGCGGCGAATGAACTTTATTCAAAACGGATCTGGCCGACAGTCAGGTCAATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCGGCGGC > 2:1012188/1‑150 TCATGCGAACGCGCCACCAACTCTTCGTCTGTGAGCTCGCGGGGGTCATAGCGCATGGGCGGCGAATGAACTTTATTCAAAACGGATCTGGCCGACAGTCAGGTCAATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCGGCGGCgtac > 1:1910560/1‑146 GGTCAATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCGGCGGCATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCA > 1:792811/1‑150 AATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCTGCGTCATTGACCTTACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAG > 1:654830/1‑150 AATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCGGCGGCATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAG > 2:1177728/1‑150 ATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCGGCGGCATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTT < 1:1962836/141‑1 ATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCGGCGGCATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTT > 2:1962836/1‑141 ATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGA < 1:54485/108‑1 ATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGA > 2:54485/1‑108 CTCCTCATGCGAACGCGCCACCAACTCTTCGTCTGTGAGCTCGCGGGGGTCATAGCGCATGGGCGGCGAATGAACTTTATTCAAAACGGATCTGGCCGACAGTCAGGTCAATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCGGCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2379761‑2379610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAG > NC_002947/2379652‑2379758 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |