New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2683396	87 (0.930)	5 (0.060)	3/216	NT	5.8%	intergenic (+29/+84)	prpE/PP_2352	propionyl‑CoA synthetase/hypothetical protein
	?	NC_002947	= 2683447	87 (1.080)					intergenic (+80/+33)	prpE/PP_2352	propionyl‑CoA synthetase/hypothetical protein

TTCCGGCAAGATTCTGCGGGCGGTGCTGCGCAAGATTGCCGATGGGCAGGATTATGTGCCGCCGTCGACCCTGGATGACCCGGCAGTGCTGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2683232‑2683396 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatggccctttcgcgggTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGATCTCCCCCAGCACTGCCGGGTCATCCAGGGT  <  NC_002947/2683447‑2683299                                                                                                                                                                                                                                                                                                                            TTCCGGCAAGATTCTGCGGGCGGTGCTGCGCAAGATTGCCGATGGGCAGGATTATGTGCCGCCGTCGACCCTGGATGACCCGGCAGTGCTGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGA                                                                                                                                                                      >  1:1120013/1‑150    CGGCAAGATTCTGCGGGCGGTGCTGCGCAAGATTGCCGATGGGCAGGATTATGTGCCGCCGTCGACCCTGGATGACCCGGCAGTGCTGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGG                                                                                                                                                                   <  1:431349/150‑1     GGCAAGATTCTGCGGGCGGTGCTGCGCAAGATTGCCGATGGGCAGGATTATGTGCCGCCGTCGACCCTGGATGACCCGGCAGTGCTGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGC                                                                                                                                                                  >  1:800150/1‑150      GCAAGATTCTGCGGGCGGTGCTGCGCAAGATTGCCGATGGGCAGGATTATGTGCCGCCGTCGACCCTGGATGACCCGGCAGTGCTGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCC                                                                                                                                                                 >  2:2251199/1‑150        AAGATTCTGCGGGCGGTGCTGCGCAAGATTGCCGATGGGCAGGATTATGTGCCGCCGTCGACCCTGGATGACCCGGCAGTGCTGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCT                                                                                                                                                               >  2:1685160/1‑150            TTCTGCGGGCGGTGCTGCGCAAGATTGCCGATGGGCAGGATTATGTGCCGCCGTCGACCCTGGATGACCCGGCAGTGCTGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCG                                                                                                                                                           >  1:1789285/1‑150                  GGGCGGTGCTGCGCAAGATTGCCGATGGGCAGGATTATGTGCCGCCGTCGACCCTGGATGACCCGGCAGTGCTGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGTA                                                                                                                                                     <  2:1120013/150‑1                                         GATGGGCAGGATTATGTGCCGCCGTCGACCCTGGATGACCCGGCAGTGCTGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGC                                                                                                                                                                  <  2:2074876/114‑1                                         GATGGGCAGGATTATGTGCCGCCGTCGACCCTGGATGACCCGGCAGTGCTGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGC                                                                                                                                                                  >  1:2074876/1‑114                                              GCAGGATTATGTGCCGCCGTCGACCCTGGATGACCCGGCAGTGCTGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGA                                                                                                                                                                      >  2:351680/1‑105                                              GCAGGATTATGTGCCGCCGTCGACCCTGGATGACCCGGCAGTGCTGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGA                                                                                                                                                                      <  1:351680/105‑1                                                AGGATTATGTGCCGCCGTCGACCCTGGATGACCGGGCAGTGCTGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGA                                                                                                                       >  1:51694/1‑150                                                     TATGTGCCGCCGTCGACCCTGGATGACCCGGCAGTGCTGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCAC                                                                                                                  >  1:1963358/1‑150                                                                            TGACCCGGCAGTGCTGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAA                                                                                           <  1:2012864/150‑1                                                                            TGACCCGGCAGTGCTGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAA                                                                                           <  2:51694/150‑1                                                                            TGACCCGGCAGTGCTGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAA                                                                                           <  2:1963358/150‑1                                                                                                AGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGG                                                                                                                                                       >  2:1115888/1‑70                                                                                                AGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGG                                                                                                                                                       <  1:1115888/70‑1                                                                                                                                                         GCCCTTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACTACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGATCTCCCCCAGCACTGCCGG              <  2:769058/150‑1                                                                                                                                                         GCCCTTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGATCTCCCCCAGCACTGCCGG              <  2:423515/150‑1                                                                                                                                                         GCCCTTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGATCTCCCCCAGCACTGCCGG              <  2:2104881/150‑1                                                                                                                                                         GCCCTTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGATCTCCCCCAGCACTGCCGG              <  2:2202920/150‑1                                                                                                                                                         GCCCTTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGATCTCCCCCAGCACTGCCGG              <  1:1375031/150‑1                                                                                                                                                         GCCCTTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGATCTCCCCCAGCACTGCCGG              <  1:1523542/150‑1                                                                                                                                                         GCCCTTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGATCTCCCCCAGCACTGCCGG              <  2:2336338/150‑1                                                                                                                                                         GCCCTTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGATCTCCCCCAGCACTGCCGG              <  1:697913/150‑1                                                                                                                                                         GCCCTTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGC                                               >  1:1510782/1‑117                                                                                                                                                         GCCCTTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGC                                               <  2:1510782/117‑1                                                                                                                                                          CCCTTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAACCCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGATCTCCCCCAGCACTGCCGGG             <  2:45681/150‑1                                                                                                                                                          CCCTTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCA                                          <  2:2256527/121‑1                                                                                                                                                          CCCTTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCA                                          >  1:2256527/1‑121                                                                                                                                                           CCTGTCGCGGGTAACCCCGCTCCTGCACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGATCTCCCCCAGCACTGCCGGGT            <  2:251579/150‑1                                                                                                                                                            CTTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAA                                                                   >  2:1114529/1‑94                                                                                                                                                            CTTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAA                                                                   <  1:1114529/94‑1                                                                                                                                                             TTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGC                                           <  2:885515/117‑1                                                                                                                                                             TTTCGCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGC                                           >  1:885515/1‑117                                                                                                                                                                 GCGGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGATCTCCCCCAGCACTGCCGGGTCATCCA      >  2:1534279/1‑150                                                                                                                                                                   GGGTAACCCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGATCTCCCCCAGCACTGCCGGGTCATCCAGG    <  1:1385764/150‑1                                                                                                                                                                   GGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGATCTCCCCCAGCACTGCCGGGTCATCCAGG    <  1:989834/150‑1                                                                                                                                                                   GGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGA                                 <  1:783642/121‑1                                                                                                                                                                   GGGTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGA                                 >  2:783642/1‑121                                                                                                                                                                    GGTAAACCCGCTCCTACACGACGGCCTCTGCCGCACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGATCTCCCCCAGCACTGCCGGGTCATCCAGGG   >  1:940453/1‑150                                                                                                                                                                     GTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGATCTCCCCCAGCACTGCCGGGTCATCCAGGGT  <  1:1895882/150‑1                                                                                                                                                                     GTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGATCTC                             >  2:135874/1‑123                                                                                                                                                                     GTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGATCTC                             >  2:1316564/1‑123                                                                                                                                                                     GTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGATCTC                             <  1:135874/123‑1                                                                                                                                                                     GTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGATCTC                             <  1:1316564/123‑1                                                                                                                                                                                                                                                                                                                            TTCCGGCAAGATTCTGCGGGCGGTGCTGCGCAAGATTGCCGATGGGCAGGATTATGTGCCGCCGTCGACCCTGGATGACCCGGCAGTGCTGGGGGAGATCGAAGCGGTGCTGGCAGATTTGCCCAGGGCGGGTTGATGGTTTGACCTCGATGGCCCTTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2683232‑2683396 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatggccctttcgcgggTAAACCCGCTCCTACACGACGGCCTCTGCCGAACCACCGATGCGCGTGCCGCCCGCGAAAGGGCCATCGAGGTCAAACCATCAACCCGCCCTGGGCAAATCTGCCAGCACCGCTTCGATCTCCCCCAGCACTGCCGGGTCATCCAGGGT  <  NC_002947/2683447‑2683299

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.