| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3055224 | 72 (0.770) | 4 (0.040) | 4/240 | NT | 5.3% | coding (444/792 nt) | PP_2667 | ABC transporter permease |
| ? | NC_002947 | = 3055289 | 75 (0.840) | coding (379/792 nt) | PP_2667 | ABC transporter permease | |||||
GCGCATTTTCCACAACGGGTACAGCGCCGACGACAGGAAGAACAGCGGGAAGATCACGAAGTTCATCACCCCGGCGAAGTTCTCCAGCTGGCGGATGGCGTTCGACAGCAATAGCCCCAGGGCACTGAGCATGAAGGCCACCAGTAGCAATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3055071‑3055224‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgccTTCCTCGCCATCGCCTGGTTATACGGGGTACAACCACCGGCAGCGGGCTTGCTGATGGCGCTGCCGGCATTGCTACTGGTGGCCTTCATGCTCAGTGCCCTGGGGCTATTGCTGTCGAACGCCATCCGCCAGCTGGAGAACTTCGCCGG < NC_002947/3055289‑3055141 GCGCATTTTCCACAACGGGTACAGCGCCGACGACAGGAAGAACAGCGGGAAGATCACGAAGTTCATCACCCCGGCGAAGTTCTCCAGCTGGCGGATGGCGTTCGACAGCAATAGCCCCAGGGCACTGAGCATGAAGGCCACCAGTAGCAA > 2:1699334/1‑150GCGCATTTTCCACAACGGGTACAGCGCCGACGACAGGAAGAACAGCGGGAAGATCACGAAGTTCATCACCCCGGCGAAGTTCTCCAGCTGGCGGATGGCGCTCGGCAACAATATCCCCATGGCTCTGAGCATGAAGGCCACCAGTAGCAA > 2:2230897/1‑150 GGAAGATCACGAAGTTCATCACCCCGGCGAAGTTCTCCAGCTGGCGGATGGCGTTCGACAGCAATAGCCCCAGGGCACTGAGCATGAAGGCCACCAGTAGCAATGCCTTCCTCGCCATCGCCTGGTTATACGGGGCACAACCACCGGCAG > 1:1691159/1‑150 CACGAAGTTCATCACCCCGGCGAAGTTCTCCAGCTGGCGGATGGCGTTCGACAGCAATAGCCCCAGGGCACTGAGCATGAAGGCCACCAGTAGCAATGCCTTCCTCGCCATCGCCTGGTTATACGGGGTACAACCACCGGCAGCGGGCTT > 1:1869000/1‑150 AGCTGGCGGATGGCGTTCGACAGCAATAGCCCCAGGGCACTGAGCATGAAGGCCACCAGTAGCAATGCCTTCCTCGCCATCGCCTGGTTATACGGGGCACAACCACCGGCAGCGGGCTTGCTGATGGCGCTGCCGGCATTGCTACTGGTG < 2:1691159/150‑1 GGCGGATGGCGTTCGACAGCAATAGCCCCAGGGCACTGAGCATGAAGGCCACCAGTAGCAATGCCTTCCTCGCCATCGCCTGGTTATACGGGGTACAACCACCGGCAGCGGGCTTGCTGATGGCGCTGCCGGCATTGCTACTGGTGGCCT < 2:1869000/150‑1 TGCCTTCCTCGCCATCGCCTGGTTATACGGGGTACAACCACCGGCAGCGGTTTCTCTGATGGCGCTGCCGGCATTGCTACTGGTGGCCTTCATGCTCAGTGCCCTGGGGCTATTGCTGTCGAACGCCATCCGCCAGCTGGAGAACTTCGC > 1:1865549/1‑150 CCTTCCTCGCCATCGCCTGGTTATACGGGGTACAACCACCGGCAGCGGGCTTGCTGATGGCGCTGCCGGCATTGCTACTGGTGGCCTTCATGCTCAGTGCCCTGGGGCTATTGCTGTCGAACGCCATCCGCCAGCTGGAGAACTTCGCCG > 1:198442/1‑150 CTTCCTCGCCATCGCCTGGTTATACGGGGTACAACCACCGGCAGCGGGCTTGCTGATGGCGCTGCCGGCATTGCTACTGGTGGCCTTCATGCTCAGTGCCCTGGGGCTATTGCTGTCGAACGCCATCCGCCAGCTGGAGAACTTCGCCGG > 1:984099/1‑150 CTTCCTCGCCATCGCCTGGTTATACGGGGTACAACCACCGGCAGCGGGCTTGCTGATGGCGCTGCCGGCATTGCTACTGGTGGCCTTCATGCTCAGTGCCCTGGGGCTATTGCTGT < 1:1113299/116‑1 CTTCCTCGCCATCGCCTGGTTATACGGGGTACAACCACCGGCAGCGGGCTTGCTGATGGCGCTGCCGGCATTGCTACTGGTGGCCTTCATGCTCAGTGCCCTGGGGCTATTGCTGT > 2:1113299/1‑116 GCGCATTTTCCACAACGGGTACAGCGCCGACGACAGGAAGAACAGCGGGAAGATCACGAAGTTCATCACCCCGGCGAAGTTCTCCAGCTGGCGGATGGCGTTCGACAGCAATAGCCCCAGGGCACTGAGCATGAAGGCCACCAGTAGCAATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3055071‑3055224‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgccTTCCTCGCCATCGCCTGGTTATACGGGGTACAACCACCGGCAGCGGGCTTGCTGATGGCGCTGCCGGCATTGCTACTGGTGGCCTTCATGCTCAGTGCCCTGGGGCTATTGCTGTCGAACGCCATCCGCCAGCTGGAGAACTTCGCCGG < NC_002947/3055289‑3055141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |