New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3081158 =	75 (0.800)	17 (0.190)	13/234	NT	19.3%	coding (1400/1719 nt)	PP_2691	hypothetical protein
	?	NC_002947	3081186 =	72 (0.820)					coding (1372/1719 nt)	PP_2691	hypothetical protein

CTTCAGTGCTGCCGATGCGGAGCACTTCTTCTGGTACCGCTCAGCTGAAAAAGAAGAGCCGCGCCTGGGCATTCGCGCAGAGGAGCCAGGAGCCGAAAAAGAAATGCAGCTGGGTATCGCCCGCAATATCCAGCAGTGCCATAGCGCGCTGCTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3081313‑3081158 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgctggaTATTGCGGGCGATACCCAGCTGCATTTCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCGGCTCTTCTTTTTCAGCTGAGCGGTACCAGAAGAAGTGCTCCGCATCGGCAGCACTGAAGTCGTAGCGCAACGCCCAGCCA  >  NC_002947/3081186‑3081334                                                                                                                                                                                                                                                                                                                   CTTCAGTGCTGCCGATGCGGAGCACTTCTTCTGGTACCGCTCAGCTGAAAAAGAAGAGCCGCGCCTGGGCATTCGCGCAGAGGAGCCAGGAGCCGAAAAAGAAATGCAGCTGGGTATCGCCCGCAATATCCAGCAGTGCCATAGCGCGCT                                                                                                                                                             <  1:1165155/150‑1     AGTGCTGCCGATGCGGAGCACTTCTTCTGGTACCGCTCAGCTGAAAAAGAAGAGCCGCGCCTGGGCATTCGCGCAGAGGAGCCAGGAGCCGAAAAAGAATTGCATCTGGGTATCGCCCGCAATATCCAGCAGTGCCATAGCGCGCTGCTG                                                                                                                                                         <  1:1864979/150‑1                                              TGAAAAAGAAGAGCCGCGCCTGGGCATTCGCGCAGAGGAGCCAGGAGCCGAAAAAGAAATGCAGCTGGGTATCGCCCGCAATATCCAGCAGCGCGCTATGGCACTGCTGGATATTGCGGGC                                                                                                                                             <  1:1759913/121‑1                                              TGAAAAAGAAGAGCCGCGCCTGGGCATTCGCGCAGAGGAGCCAGGAGCCGAAAAAGAAATGCAGCTGGGTATCGCCCGCAATATCCAGCAGCGCGCTATGGCACTGCTGGATATTGCGGGC                                                                                                                                             >  2:1759913/1‑121                                                          GCCGCGCCTGGGCATTCGCGCAGAGGAGCCAGGAGCCGAAAAAGAAATGCAGCTGGGTATCGCCCGCAATATCCAGCAGCGCGCTATGGCACTGCTGGATATTGCG                                                                                                                                                >  2:458388/1‑106                                                          GCCGCGCCTGGGCATTCGCGCAGAGGAGCCAGGAGCCGAAAAAGAAATGCAGCTGGGTATCGCCCGCAATATCCAGCAGCGCGCTATGGCACTGCTGGATATTGCG                                                                                                                                                <  1:458388/106‑1                                                                                                                               TATCCAGCAGTGCCATAGCGCGCTGCTGGATATTGCGGGCGATACCCAGCTGCATTTCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCGGCTCTTCTTTTTCAGCTGAGCGGTACCAGAAGAAGTGCTCCGCATCGGCAG                               >  1:843462/1‑150                                                                                                                                 TCCAGCAGTGCCATAGCGCGCTGCTGGATATTGCGGGCGATACCCAGCTGCATTTCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCGGCTCTTCTTTT                                                                       >  1:1848616/1‑108                                                                                                                                 TCCAGCAGTGCCATAGCGCGCTGCTGGATATTGCGGGCGATACCCAGCTGCATTTCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCGGCTCTTCTTTT                                                                       <  2:1848616/108‑1                                                                                                                                   CAGNAGTGCCATAGCGCGCTGCTGGATATTGCGGGCGATACCCAGCTGCATTTCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCGGCTCTTCTTTTTCAGCTGAGCGGTACCAGAAGAAGTGCTCCGCATCGGCAGCACT                           >  2:1501685/1‑150                                                                                                                                   CAGCAGTGCCATAGCGCGCTGCTGGATATTGCGGGCGGTACCCAGCTGCATTTCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCGGCTCTTCTTTTTCAGCTGAGCGGTACCAGAAGAAGTGCTCCGCATCGGCAGCACT                           >  2:1969128/1‑150                                                                                                                                   CAGCAGTGCCATAGCGCGCTGCTGGATATTGCGGGCGATACCCAGCTGCATTTCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCGGCTCTTCTTTTTCCGCGGAGCGGTACCAGAAGAAGTGCTCCGCCTCGGCAGCACT                           >  1:1840364/1‑150                                                                                                                                   CAGCAGTGCCATAGCGCGCTGCTGGATATTGCGGGCGATACCCAGCTGCATTTCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCGGCTCTTCTTTTTCAGCTGAGCGGTACCAGAAGAAGTGCTCCGCATCGACA                                >  1:1161743/1‑145                                                                                                                                   CAGCAGTGCCATAGCGCGCTGCTGGATATTGCGGGCGATACCCAGCTGCATTTCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCGGCTCTTCTTTTTCAGCTGAGCGGTACCAGAAGAAGTGCTCCGCATCGACA                                <  2:1161743/145‑1                                                                                                                                   CAGCAGTGCCATAGCGCGCTGCTGGATATTGCGGGCGATACCCAGCTGCATTTCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCGGCTCTTCTTT                                                                        <  2:601180/105‑1                                                                                                                                   CAGCAGTGCCATAGCGCGCTGCTGGATATTGCGGGCGATACCCAGCTGCATTTCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCGGCTCTTCTTT                                                                        >  1:601180/1‑105                                                                                                                                    AGCAGTGCCATAGCGCGCTGCTGGATATTGCGGGCGATACCCAGCTGCATTTCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCGGCTCTTCTTTTTCAGC                                                                  <  2:1081364/110‑1                                                                                                                                    AGCAGTGCCATAGCGCGCTGCTGGATATTGCGGGCGATACCCAGCTGCATTTCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCGGCTCTTCTTTTTCAGC                                                                  >  1:1081364/1‑110                                                                                                                                      CAGTGCCATAGCGCGCTGCTGGATATTGCGGGCGTTATCGATCTGCATGTCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCGGCTCTTCTTTTTCAGCTGAGCGGTACCAGAAGAAGTGCTCCGCATCGGCAGCACTGAA                        <  2:1840364/150‑1                                                                                                                                                      TGCTGGATATTGCGGGCGATACCCAGCTGCATTTCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCTGCTCTTCTTTTTCAGCTGAGCGGTACCAGAAGAAGTGCTCCGCATCGGCAGCACTGAAGTCGTAGCGCAACGCC        <  2:2019602/150‑1                                                                                                                                                      TGCTGGATATTGCGGGCGATACCCAGCTGCATTTCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCGGCTCTTCTTTTTCAGCTGAGCGGTACCAGAAGAAGTGCTCCGCATCGGCAGCACTGAAGTCGTAGCGCAACGCC        >  1:188172/1‑150                                                                                                                                                      TGCTGGATATTGCGGGCGATACCCAGCTGCATTTCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCGGCTCTTCTTTTTCAGCTGAGCGGTACCAGAAGAAGTGCTCCGCATCGGCAGCACTGAAGTC                     <  1:2145672/137‑1                                                                                                                                                      TGCTGGATATTGCGGGCGATACCCAGCTGCATTTCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCGGCTCTTCTTTTTCAGCTGAGCGGTACCAGAAGAAGTGCTCCGCATCGGCAGCACTGAAGTC                     >  2:2145672/1‑137                                                                                                                                                        CTGGATATTGCGGGCGATACCCAGCTGCATTTCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCGGCTCTTCTTTTTCAGCTGAGCGGTACCAGAAGAAGTGCTCCGCATCGGCAGCACTGAAGTCGTAGCGCAACGCCCA      >  1:915157/1‑150                                                                                                                                                        CTGGATATTGCGGGCGATACCCAGCTGCATTGCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCGGCTCTTCTTTTTCAGCTGAGCGGTACCAGAAGAAGTGCTCCGCATCGGCAGCACTGAAGTCGTAGCGCAACGCCCA      <  2:960473/150‑1                                                                                                                                                            ATATTGCGGGCGATACCCAGCTGCATTTCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCGGCTCTTCTTTTTCAGCTGCGCGGTCCCAGAAGAAGGCCTCCGCATCTGCAGCACCGGAGACCTACCGCCACGCCCACCCA  >  2:107420/1‑150                                                                                                                                                                                                                                                                                                                   CTTCAGTGCTGCCGATGCGGAGCACTTCTTCTGGTACCGCTCAGCTGAAAAAGAAGAGCCGCGCCTGGGCATTCGCGCAGAGGAGCCAGGAGCCGAAAAAGAAATGCAGCTGGGTATCGCCCGCAATATCCAGCAGTGCCATAGCGCGCTGCTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3081313‑3081158 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgctggaTATTGCGGGCGATACCCAGCTGCATTTCTTTTTCGGCTCCTGGCTCCTCTGCGCGAATGCCCAGGCGCGGCTCTTCTTTTTCAGCTGAGCGGTACCAGAAGAAGTGCTCCGCATCGGCAGCACTGAAGTCGTAGCGCAACGCCCAGCCA  >  NC_002947/3081186‑3081334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.