New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3081668 =	76 (0.810)	4 (0.040)	4/244	NT	5.2%	coding (890/1719 nt)	PP_2691	hypothetical protein
	?	NC_002947	3081711 =	73 (0.800)					coding (847/1719 nt)	PP_2691	hypothetical protein

GCCCTGGTGCTGGCGCAGCCGGCGGAGCCCGCCCCGTTGGCGCGCCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3081717‑3081668 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaCCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGTTGCCGACCCCCAGGTAGCGTTGAAGGGCCGGGGCCAGTTGCACTGCCCGCTGCGG  >  NC_002947/3081711‑3081858                                                                                                                                                                                                        GCCCTGGTGCTGGCGCAGCCGGCGGAGCCCGCCCCGTTGGCGCGCCTGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAG                                                                                                   >  1:272034/1‑101 GCCCTGGTGCTGGCGCAGCCGGCGGAGCCCGCCCCGTTGGCGCGCCTGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAG                                                                                                   <  2:272034/101‑1   ccttGTGCTGGCGCAGCCTGCGGAGCCCGCCCCGTTGGCGCGCCTGCACCAGGGCCGGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCA                                                                     <  1:1465029/125‑1   CCTTGTGCTGGCGCAGCCTGCGGAGCCCGCCCCGTTGGCGCGCCTGCACCAGGGCCGGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCA                                                                     >  2:1465029/1‑129                                                GCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGTTGCCGACCCCCAGGTAGCGTTGAAGGGCCGGGGCCAGTTGCACTGCCCGCTGCG   >  2:958153/1‑150                                                 CACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGTTGCCGACCCCCAGGTAGCGTTGAAGGGCCGGGGCCAGTTGCACTGCCCGCTGCGG  <  1:1252037/150‑1                                                                                                                                                                                                        GCCCTGGTGCTGGCGCAGCCGGCGGAGCCCGCCCCGTTGGCGCGCCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3081717‑3081668 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaCCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGTTGCCGACCCCCAGGTAGCGTTGAAGGGCCGGGGCCAGTTGCACTGCCCGCTGCGG  >  NC_002947/3081711‑3081858

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.