| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3219398 | 70 (0.750) | 8 (0.090) | 7/232 | NT | 10.7% | intergenic (‑98/+80) | nfxB/PP_2821 | HTH‑type transcriptional regulator NfxB/hypothetical protein |
| ? | NC_002947 | = 3219419 | 69 (0.800) | intergenic (‑119/+59) | nfxB/PP_2821 | HTH‑type transcriptional regulator NfxB/hypothetical protein | |||||
GACGATCGCGTCGGCCAGCGCTTTGAGCAGGCGCTCATCGGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3219247‑3219398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgcaggCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGAGCCGTTTTCATTCACAATGCCCGCACGATATGCAGTGTGGAATCTTCTGATGCACCTCCCTACCGATGAGCGCCTGCTC < NC_002947/3219419‑3219271 GACGATCGCGTCGGCCAGCGCTTTGAGCAGGCGCTCATCGGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCA > 2:2324595/1‑150GACGATCGCGTCGGCCAGCGCTTTGAGCAGGCGCTCATCGGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCA < 2:1623781/150‑1 TCATCGGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCT < 1:494535/150‑1 CATCGGTCGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCGATTTGAGCAAATAATGGCTCACTCAAGGCTCGCAGGCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTT < 2:1225862/150‑1 ACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGCAAGCCCCTGCAGGG < 2:392064/102‑1 ACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGCAAGCCCCTGCAGGG > 1:392064/1‑102 TGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGCAAGCCCCTGCAGGGCTGCGACCTGCGAGCC < 1:1305768/90‑1 TGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGCAAGCCCCTGCAGGGCTGCGACCAGCGAGCC > 2:1305768/1‑90 CAAATAATGGCTCAATCAAGGCTCGCAGGCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCT > 2:1142008/1‑61 CAAATAATGGCTCAATCAAGGCTCGCAGGCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCT < 1:1142008/61‑1 tggtGCTCGTTGGCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGAGCCGTTTTCATTCACAATGCCCGCACGATATGCAGTGTGGAATCTTCTGATGCACCTCCCTACCGAT < 2:132897/146‑1 GCTCGCAGGCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGAGCCGTTTTCATTCACAATGCCCGCACGATATGCAGTGTGGAATCTTCTGATGCACCTCCCTACCGATGAGC > 2:2443717/1‑150 TCGCAGTCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGAGCCGTTTTCATTCACAA < 1:1742515/94‑1 TCGCAGGCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGAGCCGTTTTCATTCACAA > 2:1742515/1‑94 TCGCAGGCAAGCCCCTACAGGGCTTCGACCTGCGAGCCTTGATTGAGCCATTATTCGCTCAAACGGGTGCCCTATGAGCCGTTTTCATTCACAATGCCCGCACGATATGCAGTGTGGAATCTTCTGCCGAACCTCCCTCCCGATGAGCtc < 2:1214197/150‑3 GCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGAGCCGTTTTCATTCACAATGCCCGCACGATATGCAGTGTGGAATCTTCTGATGCACCTCCCTACCGATGAGCGCCTGCTC < 1:336625/150‑1 GCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGAGCCGTTTTCATTCACAATGCCCGCACGATATGCAGTGTGGAATCTTCTGATGCACCTCCCTACCGATGAGCGCCTGCTC > 2:1300005/1‑150 GCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGA > 2:1490611/1‑71 GCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGA < 1:1490611/71‑1 GACGATCGCGTCGGCCAGCGCTTTGAGCAGGCGCTCATCGGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3219247‑3219398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgcaggCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGAGCCGTTTTCATTCACAATGCCCGCACGATATGCAGTGTGGAATCTTCTGATGCACCTCCCTACCGATGAGCGCCTGCTC < NC_002947/3219419‑3219271 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |