New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3498114 =	94 (1.010)	5 (0.060)	5/238	NT	5.2%	intergenic (‑475/+231)	PP_5562/PP_5563	hypothetical protein/membrane protein
	?	NC_002947	3498131 =	91 (1.020)					intergenic (‑492/+214)	PP_5562/PP_5563	hypothetical protein/membrane protein

CCAGGGATAGTGGCCGGCAGGTCCGGCCTATTCGCGGGTAAACCAGCTCCTACAACGTGGCGACACCACCGGTCGATGTAGGAGCGGGCTTGCCCGCGAATGCGGTGGCGGCTGCGACGGTGAATGATCAAGGATATTGGCCGGCAGGT‑CCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3498268‑3498114 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccAATATCCTTGATCATTCACCGTCGCAGCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCGACCGGTGGTGTCGCCACGTTGTAGGAGCTGGTTTACCCGCGAATAGGCCGGACCTGCCGGCCACTATCCCTGGTCATTCACCGT  >  NC_002947/3498131‑3498279                                                                                                                                                                                                                                                                                                                   CCAGGGATAGTGGCCGGCAGGTCCGGCCTATTCGCGGGTAAACCAGCTCCTACAACGTGGCGACACCACCGGTCGATGTAGGAGCGGGCTTGCCCGGACATGCGGTGGCGGCTGCGACGTTGAATGATCAAGGATATTGGCCGGCAGGT‑C                                                                                                                                                            <  1:895400/150‑1  CAGGGATAGTGGCCGGCAGGTCCGGCCTATTCGCGGGTAAACCAGCTCCTACAACGTGGCGACACCACCGGTCGATGTAGGAGCGGGCTTGCCCGCGAATGCGGTGGCGGCTGCGACGGTGAATGATCAAGGATATTGGCCGGCAGGT‑CC                                                                                                                                                           >  2:1456357/1‑150  CAGGGATAGTGCCCGGCAGGTCCGGCCTATTCGCGGGTAAACCAGCTCCTACAACGTGGCGACACCACCGGTCGAGGTAGGAGCGGGCTTGCCCGCGAATGCGGTGGCGGCTGCGACGGTGAATGATCAAGGATATTGGCCGGCAGGT‑CC                                                                                                                                                           <  1:246029/150‑1    GGGATAGTGGCCGGCAGGTCCGGCCTATTCGCGGGTAAACCAGCTCCTACAACGTGGCGACACCACCGGTCGATGTAGGCGCGGGCTTGCCCGCGAATGCGGTGGCGGCTGCGACGGGGAGTGAGCAAGGAGATTGGCGGGCGGGT‑CCGG                                                                                                                                                         >  2:2231925/1‑150    GGGATAGTGGCCGGCAGGTCCGGCCTATTCGCGGGTAAACCAGCTCCTACAACGTGGCGACACCACCGGTCGATGTAGGAGCGGGCTTGCCCGCGAATGCGGTGGCGGCTGCGACGGTGAATGATCAAGGATATTGGCCGGCAGGT‑CCGG                                                                                                                                                         <  1:97378/150‑1     GGATAGTGGCCGGCAGGTCCGGCCTATTCGCGGGTAAACCAGCTCCTACAACGTGGCGACACCACCGGTCGATGTAGGAGCGGGCTTGCCCGCGAATGCGGTGGCGGCTGCGACGGTGAATGATCAAGGATATTGGCCGGCAGGT‑CCGGC                                                                                                                                                        <  1:215205/150‑1     GGATAGTGGCCGGCAGGTCCGGCCTATTCGCGGGTAAACCAGCTCCTACAACGTGGCGACACCACCGGTCGATGTAGGAGCGGGCTTGCCCGCGAATGCGGTGGCGGCTGCGACGGTGAATGATCAAGGATATTGGCCGGCAGGT‑CCGGC                                                                                                                                                        >  2:1802190/1‑150     GGATAGTGGCCGGCAGGTCCGGCCTATTCGCGGGTAAACCAGCTCCTACAACGTGGCGACACCACCGGTCGATGTAGGAGCGGGCTTGCCCGCGAATGCGGTGGCGGCTGCGACGGTGAATGATCAAGGATATTGGCCGGCAGGT‑CCGGC                                                                                                                                                        <  2:1735909/150‑1                         GGCCTATTCGCGGGTAAACCAGCTCCTACAACGTGGCGACACCACCGGTCGATGTAGGAGCGGGCTTGCCCGCGAATGCGGTGGCGGCTGCGACGGTGAATGATCAAGGATATTGGCCGG‑ACCTGCCGGCCAATATCCTTGATCATTCAC                                                                                                                                    <  1:1950039/150‑1                                                                                                                                       TATTGGCCGGCAGGT‑CCGGCCAATATCCTTGATCATTCACCGTCGCAGCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCGACCGGTGGTGTCGCCACGTTGTAGGAGCTGGTTTACCCGCGAATAGGC                                      >  1:1634412/1‑134                                                                                                                                       TATTGGCCGGCAGGT‑CCGGCCAATATCCTTGATCATTCACCGTCGCAGCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCGACCGGTGGTGTCGCCACGTTGTAGGAGCTGGTTTACCCGCGAATAGGC                                      <  2:1634412/134‑1                                                                                                                                         TTGGCCGGCAGGT‑CCGGCCAATATCCTTGATCATTCACCGTCGCAGCCGCCACCGCATTCGC                                                                                                            <  2:101615/62‑1                                                                                                                                         TTGGCCGGCAGGT‑CCGGCCAATATCCTTGATCATTCACCGTCGCAGCCGCCACCGCATTCGC                                                                                                            >  1:101615/1‑62                                                                                                                                                        CGGCCAATATCCTTGATCATTCACCGTCGCAGCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCGACCGGTGGTGTCGCCACGTTGTAGGAGCTGGTTTACCCGCGAATAGGCCGGACCTGCCGGCCACTATCCCTGGTCATTCA      <  2:895400/150‑1                                                                                                                                                          GCCAATATCCTTGATCATTCACCGTCGCAGCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCGACCGGTGGTGTCGCCACGTTGTAGGAGCTGGTTTACCCGCGAATAGGCCGGACCTGCCGGCCACTATCCCTGGTCATTCACC    >  2:2105379/1‑150                                                                                                                                                          GCCAATATCCTTGATCATTCACCGTCGCAGCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCGACCGGTGGTGTCGCCACGTTGTAGGAGCTGGTTTACCCGCGAATAGGCCGGACCTGCCGGCCACTATCCCTGGTCATTCACC    >  1:750159/1‑150                                                                                                                                                            CAATATCCTTGATCATTCACCGTCGCAGCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCGACCGGTGGTGTCGCCACGTTGTAGGACCTGGTTTACCCGCGAATAGGCCGTACCTGCCGGCCACTATCCCTCGTCACTCACCGT  >  2:659871/1‑150                                                                                                                                                                                                                                                                                                                   CCAGGGATAGTGGCCGGCAGGTCCGGCCTATTCGCGGGTAAACCAGCTCCTACAACGTGGCGACACCACCGGTCGATGTAGGAGCGGGCTTGCCCGCGAATGCGGTGGCGGCTGCGACGGTGAATGATCAAGGATATTGGCCGGCAGGT‑CCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3498268‑3498114 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccAATATCCTTGATCATTCACCGTCGCAGCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATCGACCGGTGGTGTCGCCACGTTGTAGGAGCTGGTTTACCCGCGAATAGGCCGGACCTGCCGGCCACTATCCCTGGTCATTCACCGT  >  NC_002947/3498131‑3498279

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.