| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3513211 = | 73 (0.780) | 4 (0.050) | 4/238 | NT | 5.5% | coding (1836/4158 nt) | PP_3108 | rhs family protein |
| ? | NC_002947 | 3513240 = | 68 (0.770) | coding (1865/4158 nt) | PP_3108 | rhs family protein | |||||
GGTTACTGCGACCAGGTGCTGGCGTTCGTCATAGCGGTAGTACGTACTCTTGCCCGAGCAGTCCTGGTAGCGCTCGACCTGGGCCAGGGTGTTCCACCACAGGTACTTGGACTTGTAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3513364‑3513211‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatcgATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAGCGCTACCAGGACTGCTCGGGCAAGAGTACGTACTACCGCTATGACGAACGCCAGCACCTGGTCGCAGTAACCGACGCGCTGAACCAGACCACCA > NC_002947/3513240‑3513386 GGTTACTGCGACCAGGTGCTGGCGTTCGTCATAGCGGTAGTACGTACTCTTGCCCGAGCAGTCCTGGTAGCGCTCGACCTGGGCCAGGGTGTTCCACCACAGGTACTTGGACTTGTAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTC > 1:2321031/1‑150 GTTACTGCGACCAGGTGCTGGCGTTCGTCATAGCGGTAGTACGTACTCTTGCCCGAGCAGTCCTGGTAGCGCTCGACCTGGGCCAGGGTGTTCCACCACAGGTACTTGGACTTGTAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTCA > 2:2431522/1‑150 TTACTGCGACCAGGTGCTGGCGTTCGTCATAGCGGTAGTACGTACTCTTGCCCGAGCAGTCCTGGTAGCGCTCGACCTGGGCCAGGGTGTTCCACCACAGGTACTTGGACTTGTAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTCAT < 1:150350/150‑1 TTACTGCGACCAGGTGCTGGCGTTCGTCATAGCGGTAGTACGTACTCTTGCCCGAGCAGTCCTGGTAGCGCTCGACCTGGGCCAGGGTGTTCCACCACAGGTACTTGGACTTGTAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTCAT > 2:150350/1‑150 TGGCGTTCGTCATAGCGGTAGTACGTACTCTTGCCCGAGCAGTCCTGGTAGCGCTCGACCTGGGCCAGGGTGTTCCACCACAGGTACTTGGACTTGTAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTCAT > 1:389241/1‑133 TGGCGTTCGTCATAGCGGTAGTACGTACTCTTGCCCGAGCAGTCCTGGTAGCGCTCGACCTGGGCCAGGGTGTTCCACCACAGGTACTTGGACTTGTAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTCAT < 2:389241/133‑1 CATCGATGATGGTGTGCGGCAGGCCGTCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAGCGCTACCAGGACTGCTCGGGCAAGAGTACGTACTACCGCTA > 1:477821/1‑126 CATCGATGATGGTGTGCGGCAGGCCGTCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAGCGCTACCAGGACTGCTCGGGCAAGAGTACGTACTACCGCTA < 2:477821/126‑1 ATGATGGTGTGCGGCAGGCCGTCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGG > 1:2138282/1‑69 ATGATGGTGTGCGGCAGGCCGTCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGG < 2:2138282/69‑1 TCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAGCGCTACCAGGACTGCTCGGGCAcgc > 1:1474759/1‑78 TCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAGCGCTACCAGGACTGCTCGGGCAAGAGTACGTACTACCGCTATGACGAACGCCAGCACCTGGTCGCAGTAACCGACGCGCTGAACCAGACCACCA > 1:612335/1‑150 TCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAGCGCTACCAGGACTGCTCGGGCAAGA < 2:1474759/81‑1 GGTTACTGCGACCAGGTGCTGGCGTTCGTCATAGCGGTAGTACGTACTCTTGCCCGAGCAGTCCTGGTAGCGCTCGACCTGGGCCAGGGTGTTCCACCACAGGTACTTGGACTTGTAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3513364‑3513211‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatcgATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAGCGCTACCAGGACTGCTCGGGCAAGAGTACGTACTACCGCTATGACGAACGCCAGCACCTGGTCGCAGTAACCGACGCGCTGAACCAGACCACCA > NC_002947/3513240‑3513386 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |