New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3640830 =	86 (0.920)	6 (0.070)	6/230	NT	7.6%	intergenic (+34/+46)	PP_3207/PP_3208	cyclase/Pdr/VanB family oxidoreductase
	?	NC_002947	3640868 =	67 (0.780)					intergenic (+72/+8)	PP_3207/PP_3208	cyclase/Pdr/VanB family oxidoreductase

GCGCCTGATCACCGCGATGAGTACCTCAGCGATGCCCAGCGCAACAGCGGAGAATGGATAACGCCCTGCGTATCGGGCTGCCACAGCGCCCGGTTGGTGCTGGACGTTTGACCATCGCCCGCAGCTGCCCGACGGCCAACGGCTGACGGCAGCTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3640986‑3640830 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagctgcgGGCGATGGTCAAACGTCCAGCACCAACCGGGCGCTGTGGCAGCCCGATACGCAGGGCGTTATCCATTCTCCGCTGTTGCGCTGGGCATCGCTGAGGTACTCATCGCGGTGATCAGGCGCCCCCTCGATGACCCGGCTGACACAGGCGCC  >  NC_002947/3640868‑3641016                                                                                                                                                                                                                                                                                                                    GCGCCTGATCACCGCGATGAGTACCTCAGCGATGCCCAGCGCAACAGCGGAGAATGGATAACGCCCTGCGTATCGGGCTGCCACAGCGCCCGGTTGGTGCTGGACGTTTGACCATCGCCCGCAGCTGCCCGACGGCCAACGGCTGACGGC                                                                                                                                                              >  1:1248843/1‑150   GCCTGATCACCGCGATGAGTACCTCAGCGATGCCCAGCGCAACAGCGGAGAATGGATAACGCCCTGCGTATCGGGCTGCCACAGCGCCCGGTTGGTGCTGGACGTTTGACCATCGCCCGCAGCTGCCCGACGGCCAACGGCTGACGGCAG                                                                                                                                                            >  2:781925/1‑150   GCCTGATCACCGCGATGAGTACCTCAGCGATGCCCAGCGCAACAGCGGAGAATGGATAACGCCCTGCGTATCGGGCTGCCACAGCGCCCGGTTGGTGCTGGACGTTTGACCATCGCCCGCAGCTGCCCGACGGCCAACGGCTGACGGC                                                                                                                                                              >  2:567615/1‑148   GCCTGATCACCGCGATGAGTACCTCAGCGATGCCCAGCGCAACAGCGGAGAATGGATAACGCCCTGCGTATCGGGCTGCCACAGCGCCCGGTTGGTGCTGGACGTTTGACCATCGCCCGCAGCTGCCCGACGGCCAACGGCTGACGGC                                                                                                                                                              <  1:567615/148‑1    CCTGATCACCGCGATGAGTACCTCAGCGATGCCCAGCGCAACAGCGGAGAATGGATAACGCCCTGCGTATCGGGCTGCCACAGCGCCCGGTTGGTGCTGGACGTTTGACCATCGCTCGCAGCTGCCCGACGGCCAACGGCTGACGGCAGC                                                                                                                                                           <  2:923709/150‑1     CTGATCACCGCGATGAGTACCTCAGCGATGCCCAGCGCAACAGCGGAGAATGGATAACGCCCTGCGTATCGGGCTGCCACAGCGCCCGGTTGGTGCTGGACGTTTGACCATCGCCCGCAGCTGCCCGACGGCCAACGGCTGACGGCAGCT                                                                                                                                                          <  1:781925/150‑1     CTGATCACCGCGATGAGTACCTCAGCGATGCCCAGCGCAACAGCGGAGAATGGATAACGCCCTGCATATCGGGCTGCCACAGCGCCCGGTTGGTGCTGGACGTTTGACCATCGCCCGCAGCTGCCCGACGGCCAACGGCTGACGGCAGCT                                                                                                                                                          >  2:811192/1‑150                          TCAGCGATGCCCAGCGCAACAGCGGAGAATGGATAACGCCCTGCGTATCGGGCTGCCACAGCGCCCGGTTGGTGCTGGACGTTTGACCATCGCCCGCAGCTGCCCGACGGCCAACGGCTGACGGCA                                                                                                                                                             >  2:1212194/1‑126                          TCAGCGATGCCCAGCGCAACAGCGGAGAATGGATAACGCCCTGCGTATCGGGCTGCCACAGCGCCCGGTTGGTGCTGGACGTTTGACCATCGCCCGCAGCTGCCCGACGGCCAACGGCTGACGGCA                                                                                                                                                             <  1:1212194/126‑1                                                                                                                CCATCGCCCGCAGCTGCCCGACGGCCAACGGCTGACGGCAGCTGCGGGCGATGGTCAAACGTCCAGCACCAACCGGGCGCTGTGGCAGCCCGATACGCAGGGCGTTATCCATTCTCCGCTGTTGCGCTGGGCATCGCTGAGGTACTCATC                                               >  1:1562239/1‑150                                                                                                                       CCGCAGCTGCCCGACGGCCAACGGCTGACGGCAGCTGCGGGCGATGGTCAAACGTCCAGCACCAACCGGGCGCTGTGGCAGCCCGATACGCAGG                                                                                                <  2:2203735/94‑1                                                                                                                       CCGCAGCTGCCCGACGGCCAACGGCTGACGGCAGCTGCGGGCGATGGTCAAACGTCCAGCACCAACCGGGCGCTGTGGCAGCCCGATACGCAGG                                                                                                >  1:2203735/1‑94                                                                                                                              TGCCCGACGGCCAACGGCTGACGGCAGCTGCGGGCGATGGTCAAACGTCCAGCACCAACCGGGCGCTGTGGCAGCCCGATACGCAGGGCGTTATCCATTCTC                                                                                 <  1:669798/102‑1                                                                                                                              TGCCCGACGGCCAACGGCTGACGGCAGCTGCGGGCGATGGTCAAACGTCCAGCACCAACCGGGCGCTGTGGCAGCCCGATACGCAGGGCGTTATCCATTCTC                                                                                 >  2:669798/1‑102                                                                                                                                 CCGACGGCCAACGGCTGACGGCAGCTGAGCGCGATCGTGCAACGTCCAGCTCCGGCTGGTCGCGGGTGCAGCCCGATACGCAGGGCGTTATCCATTCTCCGCTGTTGCGCTGGGCATCGCTGAGGTACTCAGCGCGGTGATCAGGCGCCC                              >  1:47017/1‑150                                                                                                                                                     GCAGCTGCGGGCGATAGTCAAACGTCGAGCACCAACCGTGCGCTGTGGCAGCTCGATACGCAGGGCGTTATCCATTCTCCGCTGTTGCGCTGGGCATCGCTGAGGTACTCATCGCGGTGATCAGGCGCCCCCTCGATGACCCGGCTGACc          <  2:1116682/150‑2                                                                                                                                                       AGCTGCGGGCGATGGTCAAACGTCCAGCACCAACCGGGCGCTGTGGCAGCCCGATACGCAGGGCGTTATCCATTCTCCGCTGTTGCGCTGGGCATCGCTGAGGTACTCATCGCGGTGATCAGGCGCCCCCTCGATGACCCGGCTGACACA        <  2:2268854/150‑1                                                                                                                                                             GGGCGATGGTCAAACGTCCAGCACCAACCGGGCGCTGTGGCAGCCCGATACGCAGGGCGTTATCCATTCTCCGCTGTTGCGCTGGGCATCGCTGAGGTACTCATCGCGGTGATCAGGCGCCCCCTCGATGACCCGGCTGACACAGGCGCC  >  2:1543698/1‑150                                                                                                                                                                                                                                                                                                                    GCGCCTGATCACCGCGATGAGTACCTCAGCGATGCCCAGCGCAACAGCGGAGAATGGATAACGCCCTGCGTATCGGGCTGCCACAGCGCCCGGTTGGTGCTGGACGTTTGACCATCGCCCGCAGCTGCCCGACGGCCAACGGCTGACGGCAGCTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3640986‑3640830 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagctgcgGGCGATGGTCAAACGTCCAGCACCAACCGGGCGCTGTGGCAGCCCGATACGCAGGGCGTTATCCATTCTCCGCTGTTGCGCTGGGCATCGCTGAGGTACTCATCGCGGTGATCAGGCGCCCCCTCGATGACCCGGCTGACACAGGCGCC  >  NC_002947/3640868‑3641016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.