New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 365949187 (0.930)7 (0.080) 4/244 NT 7.8% coding (418/1620 nt) PP_3223 ABC transporter substrate‑binding protein
?NC_002947 = 3659530 81 (0.890)coding (379/1620 nt) PP_3223 ABC transporter substrate‑binding protein

CCCAGCGAGCGTTGCTGCGCGCTCAACCGGTACGAGGCCGGGGCGAGAATGGCCAGGTTGGTGGTGGACGTGGCCTGAAGGAAACCCGCGTTGGGTTTTGCCAGGACCAGGCGCACGGTGAAGTCGTCGATCACCTCGGCGTGGTCGTAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3659340‑3659491
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccAGCCAGTTGCCGGCCACCTTCGGTGCCACCTACCTGGCCGGCTACGACCACGCCGAGGTGATCGACGACTTCACCGTGCGCCTGGTCCTGGCAAAACCCAACGCGGGTTTCCTTCAGGCCACGTCCACCACCAACCTGGCCATT  <  NC_002947/3659530‑3659387
                                                                                                                                                                                                                                                                                                        
CCCAGCGAGCGTTGCTGCGCGCTCAACCGGTACGAGGCCGGGGCGAGAATGGCCAGGTTGGTGGTGGACGTGGCCTGAAGGAAACCCGCGTTGGGTTTTGCCAGGACCAGGCGCACGGTGAAGTCGTCGATCACCTCGGCGTGGTCGTAG                                                                                                                                                    <  1:506316/150‑1
CCCAGCGAGCGTTGCTGCGCGCTCAACCGGTACGAGGCCGGGGCGAGAATGGCCAGGTTGGTGGTGGACGTGGCCTGAAGGAAACCCGCGTTGGGTTTTGCCAGGACCAGGCGCACGGTGAAGTCGTCGATCACCTCGGCGTGGTCGTAG                                                                                                                                                    <  2:442622/150‑1
                          CCGGTACGAGGCCGGGGCGAGAATGGCCAGGTTGGTGGTGGACGTGGCCTGAAGGAAACCCGCGTTGGGTTTTGCCAGGACCAGGCGCACGGTGAAGTCGTCGATCACCTCGGCGTGGTCGTAGCCGGCCAGTTGCCGGCCACCTTCGGT                                                                                                                          <  2:539189/150‑1
                                          GCGAGAATGGCCAGGTTGGTGGTGGACGTGGCCTGAAGGAAACCCGCGTTGGGTTTTGCCAGGACCAGGCGCACGGTGAAGTCGTCGATCACCTCGGCGTGGTCGTAGCTAGACCGTTGCCGGCCACCTTCGGTGCCACCTACCTGGCCG                                                                                                          <  1:789977/150‑1
                                          GCGAGAATGGCCAGGTTGGTGGTGGACGTGGCCTGAAGGAAACCCGCGTTGGGTTTTGCCAGGACCAGGCGCACGGTGAAGTCGTCGATCACCTCGGCGTGGTCGTAGCCAGCCAGTTGCCGGCCACCTTCGGTGCCACCTACCTGGCCG                                                                                                          <  1:788787/150‑1
                                                            GTGGTGGACGTGGCCTGAAGGAAACCCGCGTTGGGTTTTGCCAGGACCAGGCGCACGGTGAAGTCGTCGATCACCTCGGCGTGGTCGTAGCCAGCCAGTTGCCGGCCACCTTCGGTGCCACCTACCTGGCCGGCTA                                                                                                      <  1:1660354/136‑1
                                                            GTGGTGGACGTGGCCTGAAGGAAACCCGCGTTGGGTTTTGCCAGGACCAGGCGCACGGTGAAGTCGTCGATCACCTCGGCGTGGTCGTAGCCAGCCAGTTGCCGGCCACCTTCGGTGCCACCTACCTGGCCGGCTA                                                                                                      <  1:465833/136‑1
                                                            GTGGTGGACGTGGCCTGAAGGAAACCCGCGTTGGGTTTTGCCAGGACCAGGCGCACGGTGAAGTCGTCGATCACCTCGGCGTGGTCGTAGCCAGCCAGTTGCCGGCCACCTTCGGTGCCACCTACCTGGCCGGCTA                                                                                                      >  2:1660354/1‑136
                                                            GTGGTGGACGTGGCCTGAAGGAAACCCGCGTTGGGTTTTGCCAGGACCAGGCGCACGGTGAAGTCGTCGATCACCTCGGCGTGGTCGTAGCCAGCCAGTTGCCGGCCACCTTCGGTGCCACCTACCTGGCCGGCTA                                                                                                      >  2:465833/1‑136
                                                                                                                                                  ttcaCCAGCCAGTTGCCGGCCACCTTCGGTGCCACCTACCTGGCCGGCTACGACCACGCCGAGGTGATCGACGACTTCACCGTGCGCCTGGTCCTGGCAAAACCCAACGCGGGTTTCCTTCAGGCCACGTCCACCACCAACCTGGCCATT  >  2:1478772/5‑150
                                                                                                                                                                                                                                                                                                        
CCCAGCGAGCGTTGCTGCGCGCTCAACCGGTACGAGGCCGGGGCGAGAATGGCCAGGTTGGTGGTGGACGTGGCCTGAAGGAAACCCGCGTTGGGTTTTGCCAGGACCAGGCGCACGGTGAAGTCGTCGATCACCTCGGCGTGGTCGTAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3659340‑3659491
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccAGCCAGTTGCCGGCCACCTTCGGTGCCACCTACCTGGCCGGCTACGACCACGCCGAGGTGATCGACGACTTCACCGTGCGCCTGGTCCTGGCAAAACCCAACGCGGGTTTCCTTCAGGCCACGTCCACCACCAACCTGGCCATT  <  NC_002947/3659530‑3659387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.