New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 395114123 (0.250)4 (0.060) 4/194 NT 14.6% intergenic (‑61/+134) PP_3486/PP_3487 cytochrome c/hypothetical protein
?NC_002947 = 3951201 29 (0.400)intergenic (‑121/+74) PP_3486/PP_3487 cytochrome c/hypothetical protein

CCGGGCTTGCAATTGAGCGTCGCTACTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3950970‑3951141
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcggccttgcgtcgcgaaaggAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTACCTG‑‑CGTGCTTGGCATGGCAACTTCGACCTCAGCCCTGGC  <  NC_002947/3951201‑3951055
                                                                                                                                                                                                                                                                                                                                 
CCGGGCTTGCAATTGAGCGTCGCTACTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGG                                                                                                                                                                             >  2:2123292/1‑150
            TTGAGCGTCGCTACTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCG                                                                                                                                                                 <  1:2123292/150‑1
              GAGCGTCGCTACTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTC                                                                                                                                                               <  2:3521/150‑1
                 CGTCGCTACTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCG                                                                                                                                                            <  1:1462552/150‑1
                   TCGCTACTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAA                                                                                                                                                          <  1:41944/150‑1
                     GCTACTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAG                                                                                                                                                        <  1:2013734/150‑1
                      CTACTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGG                                                                                                                                                       >  1:986856/1‑150
                                                        CTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAG                                                                                                                                                        >  1:177693/1‑115
                                                        CTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAG                                                                                                                                                        <  2:177693/115‑1
                                                        CTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGT                                                                                                                                                                                >  2:1723204/1‑91
                                                        CTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGT                                                                                                                                                                                <  1:1723204/91‑1
                                                                          TCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGC                                                                                                   >  1:1314293/1‑150
                                                                                     GCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGG                                                                                                                                                                              >  1:1396644/1‑64
                                                                                     GCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGG                                                                                                                                                                              <  2:1396644/64‑1
                                                                                             TGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGAC                                                                                <  2:1314293/150‑1
                                                                                                                  AAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCC                                                                                          >  1:2199903/1‑119
                                                                                                                  AAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCC                                                                                          <  2:2199903/119‑1
                                                                                                                                                         GGCCTTGCGTCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTTCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTACCTG‑‑CGAGCTTGGCATGGCAACTT                  >  1:707409/1‑150
                                                                                                                                                           CCTTGCGTCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTATCTG‑‑CGTGCTTGGCATGGCAACTTCG                >  1:2310992/1‑150
                                                                                                                                                            CTTGCGTCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGCGCTGCCACTGCCGGGGCTGCTGCGCCGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGCTATGGCTTACCTG‑‑CGTGCTTGGCATGGCGACTTCGc               >  1:1064139/1‑149
                                                                                                                                                                 GTCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCGGCGCAGCGCTTTCGCGACGACAGGACGCTCCCAAAAGGCTTACTATATGTCTTACCTT‑‑CGTACTTGGCATTGCAACTTCGACCTCA          >  2:1330662/1‑150
                                                                                                                                                                  TCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTACCTG‑‑CGTGCTTGGCATGGCAACTTCGACCTCAG         >  1:492616/1‑150
                                                                                                                                                                      GAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTACCTG‑‑CGTGCTTGGCATGGCAACTTCGACCTCAGCCCT     >  2:986856/1‑150
                                                                                                                                                                      GAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTACCTG‑‑CGTGCTTGGCATGGCAACTTCGACCTCAGCCCT     >  2:104674/1‑150
                                                                                                                                                                        AAGTAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTT‑‑CTGAACTTGCTTGGCATGGCAACTTCGGCCTGAGCCCTGG   >  1:123288/1‑150
                                                                                                                                                                         gGGAGCGCGCGGCGCTCGCCTCTTTCTGCGCTTGAGCGGCCCCGGCCGGGGCTGCTGCGCAGCCCTTTCGGGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTACCTG‑‑CGTGCTGGGCATGGCAACTTCGACCTCAGCCCTGGC  <  2:1064139/149‑1
                                                                                                                                                                                                                                                                                                                                 
CCGGGCTTGCAATTGAGCGTCGCTACTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3950970‑3951141
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcggccttgcgtcgcgaaaggAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAGGGCTTGCGATATGGCTTACCTG‑‑CGTGCTTGGCATGGCAACTTCGACCTCAGCCCTGGC  <  NC_002947/3951201‑3951055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.