| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4091366 = | 106 (1.140) | 6 (0.070) | 6/240 | NT | 5.5% | intergenic (+8/‑70) | gudP/garD | glucarate transporter/galactarate dehydratase |
| ? | NC_002947 | 4091395 = | 104 (1.160) | intergenic (+37/‑41) | gudP/garD | glucarate transporter/galactarate dehydratase | |||||
GTCGTTGACGACGACCACGACGTTGTCGTCGTCGTGCAGGCGGACGTAGCGGGGCGAGTCGGAATGTTCGATCAACTGCATGTTTGGGCCCTACTTGTCAGGTTCTCAGGCTTTTGTACATCCGCCCATGCCGGG‑CGACCCGGCGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4091516‑4091366‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGGTCGTCGTCAACGACGG > NC_002947/4091395‑4091518 GTCGTTGACGACGACCACGACGTTGTCGTCGTCGTGCAGGCGGACGTAGCGGGGCGAGTCGGAATGTTCGATCAACTGCATGTTTGGGCCCTACTTGTCAGGTTCTCAGGCTTTTGTACATCCGCCCATGCCGGG‑CGACCCGGCGCGGGC > 1:304939/1‑150GTCGTTGACGACGACCACGACGTTGTCGTCGTCGTGCAGGCGGACGTAGCGGGGCGAGTCGGAATGTTCGATCAACTGCATGTTTGGGCCCTACTTGTCAGGTTCTCAGGCTTTTGTACATCCGCCCATGCCGGG‑CGACCCGGCGCGGGC < 1:905124/150‑1 GACCACGACGTTGTCGTCGTCGTGCAGGCGGACGTAGCGGGGCGAGTCGGAATGTTCGATCAACTGCATGTTTGGGCCCTACTTGTCAGGTTCTCAGGCTTTTGTACATCCGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAA < 1:594451/150‑1 TCGGAATGTTCGATCAACTGCATGTTTGGGCCCTACTTGTCAGGTTCTCAGGCTTTTGTACATCCGCCCGCGCCGGGTCG‑CCCGGCATGGGCGGATGTACAAAAGCCTG < 2:133098/109‑1 TCGGAATGTTCGATCAACTGCATGTTTGGGCCCTACTTGTCAGGTTCTCAGGCTTTTGTACATCCGCCCGCGCCGGG‑TCGCCCGGCATGGGCGGATGTACAAAAGCCTG > 1:133098/1‑109 ATCCGCCCATGCCGGG‑CGACCCGGCGCGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGGTCGTCGTCAA > 2:868784/1‑150 TCCGCCCATGCCGGG‑CGACCCGGCGCGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGGTCGTCGTCAAC > 2:1586928/1‑150 CCATGCCGGG‑CGACCCGGCGCGGGAGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGGTCGTCGTCAACGACGG > 2:1625243/1‑150 GTCGTTGACGACGACCACGACGTTGTCGTCGTCGTGCAGGCGGACGTAGCGGGGCGAGTCGGAATGTTCGATCAACTGCATGTTTGGGCCCTACTTGTCAGGTTCTCAGGCTTTTGTACATCCGCCCATGCCGGG‑CGACCCGGCGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4091516‑4091366‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGGTCGTCGTCAACGACGG > NC_002947/4091395‑4091518 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |