| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4150085 | 59 (0.630) | 13 (0.160) | 10/214 | NT | 18.8% | intergenic (+40/‑357) | PP_3654/PP_3655 | leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein |
| ? | NC_002947 | = 4150116 | 62 (0.780) | intergenic (+71/‑326) | PP_3654/PP_3655 | leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein | |||||
CCAAGGACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4149921‑4150085‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggtaaacccgcTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTTTCACATTGGGAA < NC_002947/4150116‑4149972 CCAAGGACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTT > 2:170820/1‑150 CAAGGACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTC > 1:1491883/1‑150 AAGGACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCG > 1:2431477/1‑150 AAGGACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCG > 1:581972/1‑150 GACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGG < 2:2431963/150‑1 CCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGCCCCCTTCGCGGGc > 2:1998470/1‑149 CTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTTCCTATGTGAACCGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTA > 2:1263913/1‑150 CCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAAC < 1:1874613/150‑1 CCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAAC > 1:247803/1‑150 CGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCATGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGC < 1:707145/150‑1 CCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTT > 1:693575/1‑150 TGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGC < 2:693575/150‑1 TATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCG > 1:2021610/1‑150 TATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATAGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGC < 2:733333/149‑1 TATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATAGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGC > 1:733333/1‑149 ATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCCCCTTTGCAGGCGCGG < 2:90971/150‑1 TTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGG < 2:2021610/150‑1 GCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGC < 2:1135549/132‑1 GCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGC > 1:1135549/1‑132 TCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAG > 1:2379902/1‑80 TCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAG < 2:2379902/80‑1 CCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGG > 1:686137/1‑84 CCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGG < 2:686137/84‑1 TTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTT < 1:1503717/150‑1 AAACCCGCTCCTGCGACGGGCTACGTCACCTTTACAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTTTCACATTGG > 1:2305502/1‑150 CCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTTTCACATTGGGAA > 1:1481330/1‑150 CCAAGGACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4149921‑4150085‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggtaaacccgcTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTTTCACATTGGGAA < NC_002947/4150116‑4149972 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |