| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4353152 = | 80 (0.860) | 4 (0.040) | 4/240 | NT | 5.1% | coding (234/1086 nt) | yrpB | 2‑nitropropane dioxygenase |
| ? | NC_002947 | 4353192 = | 71 (0.790) | coding (274/1086 nt) | yrpB | 2‑nitropropane dioxygenase | |||||
GCTTCGACCAGCAGGCAGCTCTGCTCGTCGAAAGGCGCACGGTTGGACACCGGCGTGGGCGCCGTGAAATCGGCGCCCACTTCGCTGTAATAAGGCTCAAGTGCCTGCTTCCAGCGCGCATCGCGCTCGGCATCGGGCGC‑TGGCG‑GCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4353301‑4353152‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggAAGCAGGCACTTGAGCCTTATTACAGCGAAGTGGGCGCCGATTTCACGGCGCCCACGCCGGTGTCCAACCGTGCGCCTTTCGACGAGCAGAGCTGCCTGCTGGTCGAAGCGTTGCGCCCGGAGGTGGTGAGCTTCCA > NC_002947/4353192‑4353328 GCTTCGACCAGCAGGCAGCTCTGCTCGTCGAAAGGCGCACGGTTGGACACCGGCGTGGGCGCCGTGAAATCGGCGCCCACTTCGCTGTAATAAGGCTCAAGTGCCTGCTTCCAGCGCGCATCGCGCCCGGCATCGGGCGC‑TGGCG‑GCTGG > 2:1169341/1‑150 TGAAATCGGCGCCCACTTCGCTGTAATAAGGCTCAAGTGCCTGCTTCCAGCGCGCATCGCGCTCGGCATCGGGCGC‑TGGCG‑GCT < 1:278210/84‑1 TGAAATCGGCGCCCACTTCGCTGTAATAAGGCTCAAGTGCCTGCTTCCAGCGCGCATCGCGCTCGGCATCGGGCGC‑TGGCG‑GCT > 2:278210/1‑84 CTTCCAGCGCGCATCGCGCTCGGCATCGGGCGCGATGCGCGCTGGAAGCAGGCACTTGAGCCTTATTACAGCGAAGTGGGCGCCGATTTCACGGCGCCCACGCCGGTGTCCAACCGTGCGCCTTTCGACGAGCAGAGCTGCCTGCTGGTC > 2:2288657/1‑150 TTCCAGCGCGCATCGCGCTCGGCATCGGGCGC‑TGGCG‑GCTGGAAGCAGGCACTTGAGCCTTATTACAGCGAAGTGGGCGCCGATTTCACGGCGCCCACGCCGGTGTCCAACCGTGCGCCTTTCGACGAGCAGAGCTGCCTGCTGGTCGAA > 2:1791686/1‑150 AGCGCGCATCGCGCTCGGCATCGGGCGC‑TGGCG‑GCTGGAAGCAGGCACTTGAGCCTTATTACAGCGAAGTGGGCGCCGATTTCACGGCGCCCACGCCGGTGTCCAACCGTGCGCCTTTCGAC > 1:989264/1‑122 AGCGCGCATCGCGCTCGGCATCGGGCGC‑TGGCG‑GCTGGAAGCAGGCACTTGAGCCTTATTACAGCGAAGTGGGCGCCGATTTCACGGCGCCCACGCCGGTGTCCAACCGTGCGCCTTTCGAC < 2:989264/122‑1 GAANCAGGCACTTGAGCCTTATTACAGCGAAGTGGGCGCCGATTTCACGGCGCCCACGCCGGTGTCCAACCGTGCGCCTTTCGACGAGCAGAGCTGCCTGCTGGTCGAAG > 2:1508764/1‑110 GAAGCAGGCACTTGAGCCTTATTACAGCGAAGTGGGCGCCGATTTCACGGCGCCCACGCCGGTGTCCAACCGTGCGCCTTTCGACGAGCAGAGCTGCCTGCTGGTCGAAGCGTTGCGCCCGGAGGTGGTGAGCTTCCA > 1:542287/1‑138 GAAGCAGGCACTTGAGCCTTATTACAGCGAAGTGGGCGCCGATTTCACGGCGCCCACGCCGGTGTCCAACCGTGCGCCTTTCGACGAGCAGAGCTGCCTGCTGGTCGAAGCGTTGCGCCCGGAGGTGGTGAGCTTCCA < 2:542287/138‑1 GAAGCAGGCACTTGAGCCTTATTACAGCGAAGTGGGCGCCGATTTCACGGCGCCCACGCCGGTGTCCAACCGTGCGCCTTTCGACGAGCAGAGCTGCCTGCTGGTCGAAGCGTTGC < 1:2117976/116‑1 GAAGCAGGCACTTGAGCCTTATTACAGCGAAGTGGGCGCCGATTTCACGGCGCCCACGCCGGTGTCCAACCGTGCGCCTTTCGACGAGCAGAGCTGCCTGCTGGTCGAAGCGTTGC > 2:2117976/1‑116 GAAGCAGGCACTTGAGCCTTATTACAGCGAAGTGGGCGCCGATTTCACGGCGCCCACGCCGGTGTCCAACCGTGCGCCTTTCGACGAGCAGAGCTGCCTGCTGGTCGAAG < 1:1508764/110‑1 GCTTCGACCAGCAGGCAGCTCTGCTCGTCGAAAGGCGCACGGTTGGACACCGGCGTGGGCGCCGTGAAATCGGCGCCCACTTCGCTGTAATAAGGCTCAAGTGCCTGCTTCCAGCGCGCATCGCGCTCGGCATCGGGCGC‑TGGCG‑GCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4353301‑4353152‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggAAGCAGGCACTTGAGCCTTATTACAGCGAAGTGGGCGCCGATTTCACGGCGCCCACGCCGGTGTCCAACCGTGCGCCTTTCGACGAGCAGAGCTGCCTGCTGGTCGAAGCGTTGCGCCCGGAGGTGGTGAGCTTCCA > NC_002947/4353192‑4353328 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |