New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4700803	87 (0.930)	11 (0.130)	7/222	NT	11.6%	intergenic (‑70/+80)	kdpD/kdpC	sensor protein/potassium‑transporting ATPase subunit C
	?	NC_002947	= 4700847	91 (1.100)					intergenic (‑114/+36)	kdpD/kdpC	sensor protein/potassium‑transporting ATPase subunit C

CCGGGGGCAGCGCCCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4700642‑4700803 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggttCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCGGACTGTTGGACAAAGTAAAGGATGAAACATGAGTGACTCCGCCCGCGCCGATGCGCTGTTGGC  <  NC_002947/4700847‑4700699                                                                                                                                                                                                                                                                                                                         CCGGGGGCAGCGCCCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTG                                                                                                                                                                   <  2:535355/150‑1  CGGGGGCAGCGCCCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGGGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGT                                                                                                                                                                  >  1:550296/1‑150  CGGGGGCAGCGCCCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGT                                                                                                                                                                  <  2:1568430/150‑1  CGGGGGCAGCGCCCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGT                                                                                                                                                                  >  2:1489318/1‑150   GGGGGCAGCGCCCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGACGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCCCTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTA                                                                                                                                                                 <  2:1255236/150‑1    GGGGCAGCGCCCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAG                                                                                                                                                                <  2:515330/150‑1        CAGCGCCCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTGAAACAAAGCCCCCTTAACGTGTAGGAGC                                                                                                                                                            <  1:1637791/150‑1          GCGCCCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTGACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAACGCCCCCTTAACGTGTAGGAGCGG                                                                                                                                                          <  2:1191150/150‑1              CCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGA                                                                                                                                                              <  2:1925599/142‑1              CCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGA                                                                                                                                                              >  1:1925599/1‑142              CCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCAGCCGCGTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGaga                                                                                                                                                      >  1:1204790/1‑147              CCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGGCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAGAGCGCCCTTAACGTGTAGGAGCaagact                                                                                                                                                      >  2:1707364/1‑144                     CACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTCACCCGCG                                                                                                                                               >  2:1409802/1‑150                         TTCAGCCGGCGTCGGCCGGTGCGTGGGAGGTTGGCAAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGCAAGCCCCCTTAACGTGTAGGAGCGGGTAAACCCGCtccta                                                                                                                                           <  2:1818732/150‑6                                  CCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGG                                                                                                                                                         >  2:223792/1‑127                                  CCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGG                                                                                                                                                         <  1:223792/127‑1                                    CCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTG                                                                                                                                >  2:2185319/1‑150                                                      GTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGG                                                                                                              <  1:1409802/150‑1                                                      GTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGG                                                                                                              <  1:2185319/150‑1                                                       TTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTG                                                                                                                                                                   >  1:1132432/1‑96                                                       TTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTG                                                                                                                                                                   <  2:1132432/96‑1                                                                                           ATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGG                                                                                                                                                          >  2:783245/1‑69                                                                                           ATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGG                                                                                                                                                          <  1:783245/69‑1                                                                                                                   ACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCG                                                                                                               >  1:2398142/1‑88                                                                                                                   ACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCG                                                                                                               <  2:2398142/88‑1                                                                                                                          GCCGCTTCAGGGAAATCCCCCTTAACGTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGG                                                                                                              <  1:668984/82‑1                                                                                                                          GCCGCTTCAGGGAAATCCCCCTTAACGTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGG                                                                                                              >  2:668984/1‑82                                                                                                                           CCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGG                                                                                                              >  2:1782041/1‑81                                                                                                                           CCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGG                                                                                                              <  1:1782041/81‑1                                                                                                                                                          GAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCGGACTGTTGGACAAAGTAAAGGATGAAACAT                                   <  2:261895/125‑1                                                                                                                                                          GAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCGGACTGTTGGACAAAGTAAAGGATGAAACAT                                   >  1:261895/1‑125                                                                                                                                                           AGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCGGACTGTTGGACAAAGTAAAGGATGAAACATGAGTGACTCCGCCCGCGCCGATGCGC         <  1:733851/150‑1                                                                                                                                                            GCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCGGACTGTTGGACAAAGTAAAGGATGAAACATGA                                 >  2:2288670/1‑125                                                                                                                                                            GCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCGGACTGTTGGACAAAGTAAAGGATGAAACATGA                                 <  1:2288670/125‑1                                                                                                                                                             CGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCGGACTGTTGGACAAAGTAAAGGATGAAACATGAGTGACTCCGCCCGCGCCGATGCGCTG       >  2:550296/1‑150                                                                                                                                                              GGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCGGACTGTTGGACAAAGTAAAGGATGAAACATGAGTGACTCCGCCCGCGCCGATGCGCTGT      <  2:1862130/150‑1                                                                                                                                                                GTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCGGACTGTTGGACAAAGTAAAGGATGAAACATGAGTGACTCCGCCCGCGCCGATGCGCTGTTG    >  1:2036924/1‑150                                                                                                                                                                GTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCGGACTGTTGGACAAAGTAAAGGATGAAACATGAGTGACTCCGCCCGCGCCGATGCGCTGTTG    <  1:2364246/150‑1                                                                                                                                                                 TTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCGGACTGTTGGACAAAGTAAAGGATGAAACATGAGTGACTCCGCCCGCGCCGATGCGCTGTTGG   <  1:152336/150‑1                                                                                                                                                                  TCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCGGACTGTTTGACAAAGTAAAGGATGAAACATGAGTGACTCCGCCCGCGCCGATGCGCTGTTGGC  <  2:919416/150‑1                                                                                                                                                                  TCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCGGACTGTTGGACAAAGTAAAGGATGAAACATGAGTGACTCCGCCCGCGCCGATGCGCTGTTGGC  <  2:2036924/150‑1                                                                                                                                                                                                                                                                                                                         CCGGGGGCAGCGCCCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4700642‑4700803 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggttCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCGGACTGTTGGACAAAGTAAAGGATGAAACATGAGTGACTCCGCCCGCGCCGATGCGCTGTTGGC  <  NC_002947/4700847‑4700699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.