New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4884432	96 (1.030)	17 (0.200)	11/224	NT	17.3%	intergenic (+53/+76)	PP_4293/yedI	hypothetical protein/inner membrane protein
	?	NC_002947	= 4884469	76 (0.910)					intergenic (+90/+39)	PP_4293/yedI	hypothetical protein/inner membrane protein

GTGGGTGTGGAGTATGACTACTGGAAGAACAAGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4884272‑4884432 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATGGTGTTCTGGTCGGTAGTGAAGGCATCGC  <  NC_002947/4884469‑4884321                                                                                                                                                                                                                                                                                                                        GTGGGTGTGGAGTATGACTACTGGAAGAACAAGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGCACACCAAGAGCTTCTCGTTAAATGTTTACTTCTTACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAA                                                                                                                                                                  <  1:887282/150‑1      TGTGGAGTATGACTACTGGAAGAACAAGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGC                                                                                                                                                             <  1:2073410/150‑1           AGTATGACTACTGGAAGAACAAGTACGGCATCAAGGACAGCGATGAACACTGATCCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTA                                                                                                                                                        <  1:1970100/150‑1                  CTACTGGAAGAACAAGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACCAGGTA                                                                                                                                                 >  1:2260056/1‑150                   TACTGGAAGAACAAGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCT                                                                                                                                                         <  1:2327763/141‑1                   TACTGGAAGAACAAGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCT                                                                                                                                                         >  2:2327763/1‑141                               AAGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACCAGGTACCGCGTTTGCCTT                                                                                                                                    >  2:214710/1‑150                                                     ATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAG                                                                                                              <  2:214241/150‑1                                                         CTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGC                                                                                                          <  2:43793/150‑1                                                         CTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGC                                                                                                          <  1:214710/150‑1                                                          TTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTA                                                                                                               <  2:126867/144‑1                                                          TTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTA                                                                                                               >  1:126867/1‑144                                                           TCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGG                                                                                                        <  2:2260056/150‑1                                                                             CCATGCGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGC                                                                                      <  2:2377452/150‑1                                                                                     TTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGC                                                                                                          >  2:694142/1‑122                                                                                     TTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGC                                                                                                          <  1:694142/122‑1                                                                                           GTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTA                                                                                                               >  2:427532/1‑111                                                                                           GTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTA                                                                                                               <  1:427532/111‑1                                                                                                      CTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTA                                                                                                               >  2:977172/1‑100                                                                                                      CTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTA                                                                                                               <  1:977172/100‑1                                                                                                                                            gaGCGGGTTCACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAG                                                         >  2:376268/3‑116                                                                                                                                            gaGCGGGTTCACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAG                                                         <  1:376268/114‑1                                                                                                                                                      ACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATGGTGTTCTGGTCGGTAGT             >  1:1098125/1‑150                                                                                                                                                       CCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCTGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATGGTGTTCTGGTCGGTAGTG            >  2:1752511/1‑150                                                                                                                                                       CCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATGGTGTTCTGGTCGGTAGTG            >  1:1480497/1‑150                                                                                                                                                       CCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAACGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATG                              >  2:1864889/1‑132                                                                                                                                                       CCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAACGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATG                              <  1:1864889/132‑1                                                                                                                                                        CCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATGGTGTTCTGGTCGGTAGTGA           >  2:638813/1‑150                                                                                                                                                        CCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATGGTGTTCTGGTCGGTAGTGA           >  2:149655/1‑150                                                                                                                                                         CGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATGGTGTTCTGGTCGGTAGTGAA          <  1:2089506/150‑1                                                                                                                                                          GCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATGGTGTTCTGGTC                   <  1:1261545/140‑1                                                                                                                                                          GCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATGGTATTCTGGac                   >  2:1261545/1‑138                                                                                                                                                          GCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTAAGAAGTGAACCTTGACCAAGAAGCTCATGGTGTTCTGGTCGGTAGTGAAG         <  1:234896/150‑1                                                                                                                                                            TCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAATCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATGGTGTTCTGGTCGGTAGTGAAGGC       <  1:1470641/150‑1                                                                                                                                                              CTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAA                                     >  2:20679/1‑118                                                                                                                                                              CTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAA                                     <  1:20679/118‑1                                                                                                                                                              CTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTT                                              <  1:1925467/109‑1                                                                                                                                                              CTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTT                                              >  2:1925467/1‑109                                                                                                                                                               cACCAGGCACCGAGTCTGCCTTGAACCCGGCGCGGCCCCGGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATGGTGTTCTGGTCGGTAGTGAAGGCATC    <  2:1098125/149‑1                                                                                                                                                               TACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATGGTGTTCTGGTCGGTAGTGAAGGCATC    >  1:1350304/1‑150                                                                                                                                                               TACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATGGTGTTCTGGTCGGTAGTGAAGGCATC    <  2:790383/150‑1                                                                                                                                                               TACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCT                                               >  2:1016342/1‑107                                                                                                                                                               TACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCT                                               <  1:1016342/107‑1                                                                                                                                                                 CCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATGGTGTTCTGGTCGGTAGTGAAGGCATCGC  >  2:13972/1‑150                                                                                                                                                                                                                                                                                                                        GTGGGTGTGGAGTATGACTACTGGAAGAACAAGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4884272‑4884432 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATGGTGTTCTGGTCGGTAGTGAAGGCATCGC  <  NC_002947/4884469‑4884321

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.