| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4899718 | 125 (1.340) | 7 (0.080) | 4/240 | NT | 5.6% | coding (72/438 nt) | PP_4308 | AsnC family transcriptional regulator |
| ? | NC_002947 | = 4899750 | 117 (1.310) | coding (104/438 nt) | PP_4308 | AsnC family transcriptional regulator | |||||
TCCAGCGGATAACCAAGGCATTTTCGCCAACCTACCTTTACTATCAAGGTAAATAACACGAATTACCTGATGAGGTGGGTATGACCGATGCCATCGACCAATTATTGATCAACGCACTGATGGAGGACTCGCGCCGCTCGCTCAAGG‑‑‑‑‑‑‑‑‑‑CGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4899567‑4899718‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgACGCTGGGTGCGGACAGCCCGCTGACCTGCGCCAGCGCCTTGA < NC_002947/4899750‑4899708 TCCAGCGGATAACCAAGGCATTTTCGCCAACCTACCTTTACTATCAAGGTAAATAACACGAATTACCTGATGAGGTGGGTATGACCGATGCCATCGACCAATTATTGATCAACGCACTGATGGAGGACTCGCGCCGCTCGCTCAAGG‑‑‑‑‑‑‑‑‑‑CGC > 2:647962/1‑150 CCAGCGGATAACCAAGGCATTTTCGCCAACCTACCTTTACTATCAAGGTAAATAACACGAATTACCTGATGAGGTGGGTATGACCGATGCCATCGACCAATTATGGATCAACGCACTGATGGAGGACTCGCGCCGCTCGCTCAAGG‑‑‑‑‑‑‑‑‑‑CGCT < 2:402360/150‑1 TTTTCGCCAACCTACCTTTACTATCAAGGTAAATAACACGAATTACCTGATGAGGTGGGTATGACCGATGCCATCGACCAATTATTGATCAACGCACTGATGGAGGACTCGCGCCGCTCGCTCAAGG‑‑‑‑‑‑‑‑‑‑C > 1:1398796/1‑128 TTTTCGCCAACCTACCTTTACTATCAAGGTAAATAACACGAATTACCTGATGAGGTGGGTATGACCGATGCCATCGACCAATTATTGATCAACGCACTGATGGAGGACTCGCGCCGCTCGCTCAAGG‑‑‑‑‑‑‑‑‑‑C < 2:1398796/128‑1 AGGTAAATAACACGAATTACCTGATGAGGTGGGTATGACCGATGCCATCGACCAATTATTGATCAACGCACTGATGGAGGACTCGCGCCGCTCGCTCAAGGCGCAGGCGCTCGCTGACGCTGGGTGCGGACAGCCCGCTGACCTGCGCCA < 2:2200026/150‑1 AAATAACACGAATTACCTGATGAGGTGGGTATGACCGATGCCATCGACCAATTATTGATCAACGCACTGATGGAGGACTCGCGCCGCTCGCTCAAGGCGCAGGCGCTCGCTGACGCTGGGTGCGGACAGCCCGCTGACCTGCGCCAGCGC < 2:347210/150‑1 ACACGAATTACCTGATGAGGTGGGTATGACCGATGCCATCGACCAATTATTGATCAACGCACTGATGGAGGACTCGCGCCGCTCGCTCAAGGCGCAGGCGCTCGCTGACGCTGGGTGCGGACAGCCCGCTGACCTGCGCCAGCGCCTTGA < 1:1533764/150‑1 ACGAATTACCTGATGAGGTGGGTATGACCGATGCCATCGACCAATTATTGATCAACGCACTGATGGAGGACTCGCGCCGCTCGCTCAAGG‑‑‑‑‑‑‑‑‑‑CGCTGACGCTGGGTGCGGACAGCCCGCTGACCTGCG > 1:2026523/1‑126 ACGAATTACCTGATGAGGTGGGTATGACCGATGCCATCGACCAATTATTGATCAACGCACTGATGGAGGACTCGCGCCGCTCGCTCAAGG‑‑‑‑‑‑‑‑‑‑CGCTGACGCTGGGTGCGGACAGCCCGCTGACCTGCG < 2:2026523/126‑1 ATCGACCAATTATTGATCAACGCACTGATGGAGGACTCGCGCCGCTCGCTCAAGG‑‑‑‑‑‑‑‑‑‑CGC > 1:28299/1‑58 ATCGACCAATTATTGATCAACGCACTGATGGAGGACTCGCGCCGCTCGCTCAAGG‑‑‑‑‑‑‑‑‑‑CGC < 2:28299/58‑1 ATCAACGCACTGATGGAGGACTCGCGCCGCTCGCTCAAGG‑‑‑‑‑‑‑‑‑‑CGCTGACGCTGGGTGCGGACAGCCCGCTGACCTGCGCCAG < 1:2203172/80‑1 ATCAACGCACTGATGGAGGACTCGCGCCGCTCGCTCAAGG‑‑‑‑‑‑‑‑‑‑CGCTGACGCTGGGTGCGGACAGCCCGCTGACCTGCGCCAG > 2:2203172/1‑80 TCCAGCGGATAACCAAGGCATTTTCGCCAACCTACCTTTACTATCAAGGTAAATAACACGAATTACCTGATGAGGTGGGTATGACCGATGCCATCGACCAATTATTGATCAACGCACTGATGGAGGACTCGCGCCGCTCGCTCAAGG‑‑‑‑‑‑‑‑‑‑CGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4899567‑4899718‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgACGCTGGGTGCGGACAGCCCGCTGACCTGCGCCAGCGCCTTGA < NC_002947/4899750‑4899708 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |