| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4957619 = | 125 (1.340) | 9 (0.100) | 8/232 | NT | 7.4% | intergenic (‑57/+106) | fliH/fliG | flagellar assembly protein FliH/flagellar motor switch protein |
| ? | NC_002947 | 4957677 = | 110 (1.270) | intergenic (‑115/+48) | fliH/fliG | flagellar assembly protein FliH/flagellar motor switch protein | |||||
CGGCGAGATCGTGCTCGGCGGCAAGGGCGCCGAGGAAATGATCTAAGGTATTCGCGATCCCATAGCCGACGCCGCCTTTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4957770‑4957619‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTCGCCGGCCTCGGCCATGCGCCGGGCAATGGTGAGGATTTCTTTCTGCGCGGTTTCCAC > NC_002947/4957677‑4957823 CGGCGAGATCGTGCTCGGCGGCAAGGGCGCCGAGGAAATGATCTAAGGTATTCGCGATCCCATAGCCGACGCCGCCTTTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGG < 1:332572/150‑1CGGCGAGATCGTGCTCGGCGGCAAGGGCGCCGAGGAAATGATCTAAGGTATTCGCGATCCCATAGCCGACGCCGCCTTTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGATTGTGTCTGCCGACGCATTCGCGG > 1:1943591/1‑150 GGCGAGATCGTGCTCGGCGGCAAGGGCGCCGAGGAAATGATCTAAGGTATTCGCGATCCCATAGCCGACGCCGCCTTTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGG < 2:328549/150‑1 GAGGAAATGATCTAAGGTATTCGCGATCCCATAGCCGACGCCGCCTTTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGG > 2:704642/1‑119 GAGGAAATGATCTAAGGTATTCGCGATCCCATAGCCGACGCCGCCTTTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGG < 1:704642/119‑1 CCATAGCCGACGCCGCCTTTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGG > 1:2323298/1‑91 CCATAGCCGACGCCGCCTTTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGG < 2:2323298/91‑1 CCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGTTATGGTTCGGCTAAGACCGTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTCGCCG > 1:281033/1‑150 CCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGA < 2:759884/109‑1 CCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGA > 1:759884/1‑109 CGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAGGGACCGTGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTCGCCGG > 2:1180112/1‑150 GCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTCGCCGGC > 2:795448/1‑150 AAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGA > 2:2324321/1‑137 AAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGA < 1:2324321/137‑1 GTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTCGCCGGCCTCGGCCA > 2:355153/1‑150 ATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTCGCCGGCCTCGGCCATGCGCCGGGCAAT < 1:795448/150‑1 TTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTCGCCGGCCTCGGCCATGCGCCGGGCAATGGTGAGGATTTCTTTCTGCGCGGT > 2:122424/1‑150 TTCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTCGCCGGCCTCGGCCATGCGCCGGGCAATGGTGAGGATTTCTTTCTGCGCGGT > 2:155966/1‑150 TCGCGGGTAAACCCGCTCCTACAAAATTCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGCTCTCGCCGGCCTCGGCCATGCGCCGGGCAATGGTGAGGATTTCTTTCTGCGCGGTT < 1:841306/150‑1 TCGCGGGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTCGCCGGCCTCGGCCATGCGCCGGGCAATGGTGAGGATTTCTTTCTGCGCGGTT < 1:328549/150‑1 GGTAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTCGCCGGCCTCGGCCATGCGCCGGGCAATGGTGAGGATTTCTTTCTGCGCGGTTTCCAC > 1:3663/1‑150 CGGCGAGATCGTGCTCGGCGGCAAGGGCGCCGAGGAAATGATCTAAGGTATTCGCGATCCCATAGCCGACGCCGCCTTTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4957770‑4957619‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtAAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTCGCCGGCCTCGGCCATGCGCCGGGCAATGGTGAGGATTTCTTTCTGCGCGGTTTCCAC > NC_002947/4957677‑4957823 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |