New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5240403 =	78 (0.840)	5 (0.060)	5/242	NT	6.2%	intergenic (‑41/‑84)	ldh/PP_4618	leucine dehydrogenase/hypothetical protein
	?	NC_002947	5240429 =	75 (0.830)					intergenic (‑67/‑58)	ldh/PP_4618	leucine dehydrogenase/hypothetical protein

AGTGGTCCGGCGGCGGCGTCAAGGCCGAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5240435‑5240403 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgGACCACTGGACGAAACCACGCGCCACGGCTAATACTCAAACGTGTGTGGAGATACCCCATGAAGCCACGTCAAGCCTGCCTGGCCTGCCTGGAACGCGAGCCTGTCGACCTGCTGGAAGCCGCACTGTGGATTGCTGCCGAGCACGACC  >  NC_002947/5240429‑5240577                                                                                                                                                                                        AGTGGTCCGGCGGCGGCGTCAAGGCCGAGGCCGGACCACTGGACGAAACCACGCGCCACGGCTAATACTCAAACGTGTGTGGAGATACCCCATGAAGCCACGTCAAGCCTGCCTGGCCTGCC                                                              <  1:47376/122‑1 AGTGGTCCGGCGGCGGCGTCAAGGCCGAGGCCGGACCACTGGACGAAACCACGCGCCACGGCTAATACTCAAACGTGTGTGGAGATACCCCATGAAGCCACGTCAAGCCTGCCTGGCCTGCC                                                              >  2:47376/1‑122     GTCCGGCGGCGGCGTCAAGGCCGAGGCCGGACCACTGGACGAAACCACGCGCCACGGCTAATACTCAAACGTGTGT                                                                                                        <  1:448161/76‑1     GTCCGGCGGCGGCGTCAAGGCCGAGGCCGGACCACTGGACGAAACCACGCGCCACGGCTAATACTCAAACGTGTGT                                                                                                        >  2:448161/1‑76        CGGCGGCGGCGTCAAGGCCGAGGCCGGACCACTGGACGAAACCACGCGCCCCGGCTAATACTCAAACGTGTGTGGAGATACCCCATGAAGCCACGTCAAGCCTGCCTGGCCTGCCTGGAACGCGAGCCTGTCGACCTGCTGGAAGCCGCA                           >  1:1079353/1‑150                               CCGGACCACTGGACGAAACCACGCGCCACGGCTAATACTCAAACGTGTGTGGAGATACCCCATGAAGCCACGTCAAGCCTGCCTGGCCTGCCTGGAACGCGAGCCTGTCGACCTGCTGGAAGCCGCACTGTGGATTGCTGCCGAGCACGA    >  1:197680/1‑150                                 GGACCACTGGACGAAACCACGCGCCACGGCTAATACTCAAACGTGGGTGGAGATACCCCATGAAGCCACGTCAAGCCTGCCTGGCCTGCCTGGAACGCGGGCCTGTCGACCTGCTGGAAGCCGCACTGTGGATTGCTGCCGAGCACGACC  >  1:737950/1‑150                                                                                                                                                                                        AGTGGTCCGGCGGCGGCGTCAAGGCCGAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5240435‑5240403 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgGACCACTGGACGAAACCACGCGCCACGGCTAATACTCAAACGTGTGTGGAGATACCCCATGAAGCCACGTCAAGCCTGCCTGGCCTGCCTGGAACGCGAGCCTGTCGACCTGCTGGAAGCCGCACTGTGGATTGCTGCCGAGCACGACC  >  NC_002947/5240429‑5240577

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.