New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5257895 =	90 (0.960)	8 (0.090)	7/232	NT	8.3%	intergenic (‑46/+98)	PP_4634/PP_4635	alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase
	?	NC_002947	5257986 =	94 (1.090)					intergenic (‑137/+7)	PP_4634/PP_4635	alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase

GACGTTGACTACGACAAAGACGTGGCCACCGATGTGAAGTTCGACTGCGTCGAGCTGTAATCGGGTAAGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5258052‑5257895 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacaggctTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAGGTTCTCGGTGG  >  NC_002947/5257986‑5258132                                                                                                                                                                                                                                                                                                                   GACGTTGACTACGACAAAGACGTGGCCACCGATGTGAAGTTCGACTGCGTCGAGCTGTAATCGGGTAAGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAG                                                                                                                                                             <  1:996581/150‑1  ACGTTGACTACGACAAAGACGTGGCCACCGATGTGAAGTTCGACTGCGTCGAGCTGTAATCGGGTAAGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGT                                                                                                                                                            >  2:1941836/1‑150   CGTTGACTACGACAAAGACGTGGCCACCGATGTGAAGTTCGACTGCGTCGAGCTGTAATCGGGTAAGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTA                                                                                                                                                           <  1:550943/150‑1    GTTGACTACGACAAAGACGTGGCCACCGATGTGAAGTTCGACTGCGTCGAGCTGTAATCGGGTAAGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTAC                                                                                                                                                          >  1:1175667/1‑150                                                                     GCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGC‑TACCCGATTACAGCTCGACGCAGCAGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTC                                                                                        >  1:1192957/1‑150                                                                      CCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTC                                                                                        >  2:1114679/1‑150                                                                      CCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTC                                                                                        >  2:2383253/1‑150                                                                                   CTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTAAAGCTGTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGC                                                                           >  1:290185/1‑150                                                                                    TTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAG                                                                                          <  1:1756033/134‑1                                                                                    TTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAG                                                                                          >  2:1756033/1‑134                                                                                             AAGCCCGCTCCCACAGGTTCTCCCCCGGAGGGGGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCGGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGGAGTCAACGTCAGCGCGCGCGAAGCCGg                                                                 >  1:438019/1‑149                                                                                                       CCACAGGTTCTCCCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAG                                                       <  2:438019/150‑1                                                                                                                                                       TACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGT                                                                                         >  1:1615433/1‑68                                                                                                                                                       TACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGT                                                                                         <  2:1615433/68‑1                                                                                                                                                        ACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAGGTTCTCG      >  2:972281/1‑150                                                                                                                                                        ACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAGGTTCTCG      >  1:849511/1‑150                                                                                                                                                           GGCTTGCCCGATTACAGGGCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAGGTTCTCGGTG   <  2:550943/150‑1                                                                                                                                                           GGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAGGTTCTCGGTG   <  2:2400366/150‑1                                                                                                                                                           GGCTTACCCGAGTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCACCGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAGGTTCTCGGTG   <  2:290185/150‑1                                                                                                                                                            GCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAGGTTCTCGGTGG  >  2:1422028/1‑150                                                                                                                                                             CTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCA                           <  2:2246783/124‑1                                                                                                                                                             CTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCA                           >  1:2246783/1‑124                                                                                                                                                                                                                                                                                                                   GACGTTGACTACGACAAAGACGTGGCCACCGATGTGAAGTTCGACTGCGTCGAGCTGTAATCGGGTAAGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5258052‑5257895 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacaggctTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAGGTTCTCGGTGG  >  NC_002947/5257986‑5258132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.