| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5279939 = | 93 (1.000) | 5 (0.060) | 5/242 | NT | 5.1% | coding (110/1086 nt) | trmA | tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA |
| ? | NC_002947 | 5279975 = | 96 (1.060) | coding (146/1086 nt) | trmA | tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA | |||||
CAACGCGTTGATGCGTTCGCTGGCAATGGGGAAATCGTCGATCAGGATTGCCTTGTGCTTCTCGCCCGGGGCGAACATGGCGTAGTGGCGCTGGCCATCCTCGCGCCACAGGCGGAACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5280090‑5279939‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagtTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGTTGATGCCGCGCCTGAAGGCAGCCTGGCAGGCCAGC > NC_002947/5279975‑5280123 CAACGCGTTGATGCGTTCGCTGGCAATGGGGAAATCGTCGATCAGGATTGCCTTGTGCTTCTCGCCCGGGGCGAACATGGCGTAGTGGCGCTGGCCATCCTCGCGCCACAGGCGGAACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGA < 2:1479267/150‑1CAACGCGTTGATGCGTTCGCTGGCAATGGGGAAATCGTCGATCAGGATTGCCTTGTGCTTCTCGCCCGGGGCGAACATGGCGTAGTGGCGCTGGCCATCCTCGCGCCACAGGCGGAACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGA > 2:830737/1‑150 AACGCGTTGATGCGTTCGCTGGCAATGGGGAAATCGTCGATCAGGATTGCCTTGTGCTTCTCGCCCGGGGCGAACATGGCGTAGTGGCGCTGGCCATCCTCGCGCCACAGGCGGAACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAG > 1:994785/1‑150 AACGCGTTGATGCGTTCGCTGGCAATGGGGAAATCGTCGAGCAGGATTGCCTTGTGCTTCTCGCCCGGGGCGCACATGGCGTAGTGGCGCTGGCCATCCTCGCGCCACAGGCGGAACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAG > 2:256367/1‑150 ACGCGTTGATGCGTTCGCTGGCAATGGGGAAATCGTCGATCAGGATTGCCTTGTGCTTCTCGCCCGGGGCGAACATGGCGTAGTGGCGCTGGCCATCCTCGCGCCACAGGCGGAACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGT > 2:1338518/1‑150 GATTGCCTTGTGCTTCTCGCCCGGGGCGAACATGGCGTAGTGGCGCTGGCCATCCTCGCGCCACAGGCGGAACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGA > 2:1415568/1‑105 GATTGCCTTGTGCTTCTCGCCCGGGGCGAACATGGCGTAGTGGCGCTGGCCATCCTCGCGCCACAGGCGGAACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGA < 1:1415568/105‑1 TCGCCCGGGGCGAACATGGCGTAGTGGCGCTGGCCATCCTCGCGCCACAGGCGGAACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGT < 1:570433/91‑1 TCGCCCGGGGCGAACATGGCGTAGTGGCGCTGGCCATCCTCGCGCCACAGGCGGAACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGT > 2:570433/1‑91 ACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCAT < 1:627269/142‑1 ACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCAT > 2:627269/1‑142 TCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCC < 1:2248442/122‑1 TCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCC > 2:2248442/1‑122 AGGCGGTAATGCTCGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGTTGATGCCGCGC > 2:187619/1‑150 GAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGTTGATGCCGCGCCTGAAGGCAGCCTGGCAGGCC > 2:124986/1‑150 AGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGTTGATGCCGCGCCTGAAGGCAGCCTGGCAGGCCA < 2:186346/150‑1 AGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGAGTTCCCCATTGCCAGCGAACGCATCAACGCGTTGATGCCGCGCCTGAAGGCAGCCTGGCAGGCCA < 1:1467175/150‑1 GTTCCGCCTGGGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGTTGATGCCGCGCCTGAAGGCAGCCTGGCAGGCCAG < 2:428312/150‑1 TTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGTTGATGCCGCGCCTGAAGGCAGCCTGGCAGGCCAGC < 2:365688/150‑1 CAACGCGTTGATGCGTTCGCTGGCAATGGGGAAATCGTCGATCAGGATTGCCTTGTGCTTCTCGCCCGGGGCGAACATGGCGTAGTGGCGCTGGCCATCCTCGCGCCACAGGCGGAACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5280090‑5279939‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagtTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGTTGATGCCGCGCCTGAAGGCAGCCTGGCAGGCCAGC > NC_002947/5279975‑5280123 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |