New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5474992 =84 (0.900)6 (0.070) 5/232 NT 7.8% intergenic (‑150/‑156) proA/PP_4812 gamma‑glutamyl phosphate reductase/3‑methyladenine DNA glycosylase
?NC_002947 5475062 = 64 (0.740)intergenic (‑220/‑86) proA/PP_4812 gamma‑glutamyl phosphate reductase/3‑methyladenine DNA glycosylase

GCGGGGCAGTTCGTGGCTGGAGAGGCGGGGATGATAGCAATGAATGGCTTAATCGAGGCTGAATTGGACGGTGATGTTGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5475147‑5474992
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagggccgGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGACCCTGGCCAAGGCCCTGCT  >  NC_002947/5475062‑5475209
                                                                                                                                                                                                                                                                                                                
GCGGGGCAGTTCGTGGCTGGAGAGGCGGGGATGATAGCAATGAATGGCTTAATCGAGGCTGAATTGGACGGTGATGTTGGCAGTGCCGGCCGTTCTGCATTTATGCCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAA                                                                                                                                                            <  2:2433585/150‑1
GCGGGGCAGTTCGTGGCTGGAGAGGCGGGGATGATAGCAATGAATGGCTTAATCGAGGCTGAATTGGACGGTGATGTTGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAA                                                                                                                                                            <  1:2119814/150‑1
 CGGGGCAGTTCGTGGCTGGAGAGGCGGGGATGATAGCAATGAATGGCTTAATCGAGGCTGAATTGGACGGTGATGTTGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAG                                                                                                                                                           <  1:1018166/150‑1
   GGGCAGTTCGTGGCTGGAGAGGCGGGGATGATAGCAATGAATGGCTTAATCGAGGCTGAATTGGACGGTGATGTTGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGG                                                                                                                                                         <  1:302472/150‑1
    GGCAGTTCGTGGCTGGAGAGGCGGGGATGATAGCAATGAATGGCTTAATCGAGGCTGAATTGGACGGTGATGTTGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGC                                                                                                                                                        >  2:1886102/1‑150
                                           ATGGCTTAATCGAGGCTGAATTGGACGGTGATGTTGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAA                                                                                                                                                            >  1:1040996/1‑107
                                           ATGGCTTAATCGAGGCTGAATTGGACGGTGATGTTGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAA                                                                                                                                                            <  2:1040996/107‑1
                                                                           GTTGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAG                                                                                                                                                           >  2:1726990/1‑76
                                                                           GTTGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAG                                                                                                                                                           <  1:1726990/76‑1
                                                                                           CTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGA                                                                                                                    <  1:2063677/99‑1
                                                                                           CTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGA                                                                                                                    >  2:2063677/1‑99
                                                                                            TTTCGCGGGTAAACCCGATCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGC                                                                >  1:2033368/1‑150
                                                                                                         CCCGCTCCTACACAAATCCCAGTGGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGC                                                   >  2:246073/1‑150
                                                                                                         CCCGCTCCTACACAAATCCCAGTGGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTG                                                                                                     <  2:1628192/100‑1
                                                                                                         CCCGCTCCTACACAAATCCCAGTGGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTG                                                                                                     >  1:1628192/1‑100
                                                                                                                                                   AAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGACCCTGGCCAAGG         <  1:246073/150‑1
                                                                                                                                                      GGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCA                                                          <  1:994529/98‑1
                                                                                                                                                      GGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCA                                                          >  2:994529/1‑98
                                                                                                                                                        GCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGACCCTGGCCAAGGCCCTG    >  1:2166333/1‑150
                                                                                                                                                          CGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGACCCTGGCCAAGGCCCTGCT  >  1:188487/1‑150
                                                                                                                                                                                                                                                                                                                
GCGGGGCAGTTCGTGGCTGGAGAGGCGGGGATGATAGCAATGAATGGCTTAATCGAGGCTGAATTGGACGGTGATGTTGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5475147‑5474992
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagggccgGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGACCCTGGCCAAGGCCCTGCT  >  NC_002947/5475062‑5475209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.