New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5552384	78 (0.840)	6 (0.070)	5/236	NT	7.0%	coding (1565/1566 nt)	PP_4882	iron ABC transporter permease
	?	NC_002947	= 5552417	86 (0.980)					intergenic (+32/+629)	PP_4882/PP_5717	iron ABC transporter permease/hypothetical protein

CAGCCCGACCGGCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5552229‑5552384 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcttgTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTTGTTCAAATACATCCGCGTAGTCAGCAAATACACCGGCAACCCCGACACCACAATCAACAACGCCGCATACGGCGCCGCCGCCGCGAACTCGACGTTGGCTGTGTGTGC  <  NC_002947/5552417‑5552269                                                                                                                                                                                                                                                                                                                   CAGCCCGACCGGCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAA                                                                                                                                                             <  2:1359036/150‑1  AGCCCGACCGGCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAG                                                                                                                                                            <  1:1128829/150‑1   cCCCGACCTGCATGACCACCCTGGCCACCGAGGTGTCGGCACACACAGCCATCTTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTCATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGG                                                                                                                                                           <  2:1140610/149‑1   GCCCGACCGGCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTCCGCGGCTGTATTTGAACAAGG                                                                                                                                                           <  2:1107474/150‑1   GCCCGACCGGCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGG                                                                                                                                                           >  2:290379/1‑150     CCGACCGGCATGACCACCCTGGTCGCCGAGGGGTTGGCACACACAGCCAACGTCTAGTTCGCGGCGGCCTCGTGGTAGGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTGGCTGACTACGCGGATGTATTTGAACAAGGCT                                                                                                                                                         <  2:790135/150‑1      CGACCGGCATGACCACCCTGGCCACCGAGGTGTGGCCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTT                                                                                                                                                        <  2:1693325/150‑1            GCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGTGCCC                                                                                                                                                  >  1:1253683/1‑150                    ACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTT                                                                                                                                                        <  2:286619/136‑1                    ACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTT                                                                                                                                                        >  1:286619/1‑136                                     GTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGTGCCCAGGCCACATGGCGGCCTGGGCAAGC                                                                                                                         >  2:2022215/1‑150                                                CAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGTGCCCAGGCCACCTGGCGGCCTGGGCAAGCTTTCAAGCCTT                                                                                                              <  2:1253683/150‑1                                                      ACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTTGTTCAA                                                                                                        <  2:140663/150‑1                                                       CGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTTGTTCAAA                                                                                                       <  1:2022215/150‑1                                                              TTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTT                                                                                                              >  2:1655709/1‑136                                                              TTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTT                                                                                                              <  1:1655709/136‑1                                                                         GGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGG                                                                                                                                                           >  2:1312219/1‑80                                                                         GGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGG                                                                                                                                                           <  1:1312219/80‑1                                                                                                                                                      AGGCTTGTGCCCAGGCCACCTAGCGGCCTGGGCAAGCTTTCAAGCCTTGTTCAAATACATCCGCGTAGTCAGCAAATACACCGGCAACCCCGACACCACAATCAACAACGCCGCATACGGCGCCGCCGCCGCGAACTCGACGTTGGCTGT        >  2:212068/1‑150                                                                                                                                                      AGGCTTGTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTTGTTCAAATACATCCGCGTAGTCAGCAAATACACCGGCAACCCCGACACCACAATCAACAACGCCGCATACGGCGCCGCCGCCGCGAACTCGACGTTGGCTGT        >  2:841177/1‑150                                                                                                                                                       GGCTTGTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTTGTTCAAATACATCCGCGTAGTCAGCAAATACACC                                                                            <  2:1726018/81‑1                                                                                                                                                       GGCTTGTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTTGTTCAAATACATCCGCGTAGTCAGCAAATACACC                                                                            >  1:1726018/1‑81                                                                                                                                                        GCTTGTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTTGTTCAAATACATCCGCGTAGTCAGCAAATACACCGGCAACCCCGACACCACAATCAACAACGCCGCATACGGCGCCGCCGCCGCGAACTCGACGTTGGCTGTGT      <  2:1526781/150‑1                                                                                                                                                        GCTTGTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTTGTTCAAATACATCCGCGTAGTCAGCAAATACACCGGCAACCCCGACACCACAATCAACAACGCCGCATACGGCGCCGCCGCCGC                          <  2:1042725/130‑1                                                                                                                                                        GCTTGTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTTGTTCAAATACATCCGCGTAGTCAGCAAATACACCGGCAACCCCGACACCACAATCAACAACGCCGCATACGGCGCCGCCGCCGC                          >  1:1042725/1‑130                                                                                                                                                          TTGTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTTGTTCAAATACATCCGCGTAGTCAGCAAATACACCGGCAACCCCGACACCACAATCAACAACGCCGCATACGGCGCCGCCGCCGCGAACTCGACGTTGGCTGTGTGT    >  1:1491995/1‑150                                                                                                                                                            GTGCCCAGGCCACATGGCGGCCTGGGCAAGCGTTCAAGCCTTGTTCAAATACATCCGCGAATTCCATAATGTCGCCGGCAACCCCGACACCACAATCAACAACGCCGCATACGGCGCCGCCGCCGCGAACTCGACGTTGGCTGTGTGTGC  <  1:644135/150‑1                                                                                                                                                                                                                                                                                                                   CAGCCCGACCGGCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5552229‑5552384 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcttgTGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTTGTTCAAATACATCCGCGTAGTCAGCAAATACACCGGCAACCCCGACACCACAATCAACAACGCCGCATACGGCGCCGCCGCCGCGAACTCGACGTTGGCTGTGTGTGC  <  NC_002947/5552417‑5552269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.