New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5557811 =	97 (1.040)	7 (0.090)	6/204	NT	9.0%	intergenic (‑131/+200)	PP_4888/purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
	?	NC_002947	5557893 =	63 (0.830)					intergenic (‑213/+118)	PP_4888/purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase

GGCCCTGAGAAGGGCCGCGGCGTTTTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGGTTTACCCGCGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5557982‑5557811 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taggagcgggtttacccgcgaatACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAGGCGAACGGGTGACGCAGCACGATGG  >  NC_002947/5557893‑5558039                                                                                                                                                                                                                                                                                                                                 GGCCCTGAGAAGGGCCGCGGCGTTTTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGT                                                                                                                                                                           >  2:2210231/1‑150    CCTGAGAAGGGCCGCGGCGTTTTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGG                                                                                                                                                                        >  1:40285/1‑150     aTGAGAAGGGCCGCGGCGTTTTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGCAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGg                                                                                                                                                                       >  1:1663604/2‑149      TGAGAAGGGCCGCGGCGTTTTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAG                                                                                                                                                                      >  1:1795727/1‑150      TGAGAAGGGCCGCGGCGTTTTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAG                                                                                                                                                                      >  1:2386383/1‑150       GAGAAGGGCCGCGGCGTTTTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGC                                                                                                                                                                     <  1:953377/150‑1          AAGGGCCGCGGCGTTTTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGG                                                                                                                                                                  >  2:1219063/1‑150           AGGGCCGCGGCGTTTTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGGT                                                                                                                                                                 <  1:2278681/150‑1             GGCCGCGGCGTTTTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGATGTAGGAGCGGGTTT                                                                                                                                                               >  2:276479/1‑150              GCCGCGGCGTTTTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGGTTTA                                                                                                                                                              >  2:54322/1‑150               CCGCGGCGTTTTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGGTTTAC                                                                                                                                                             <  2:645696/150‑1               CCGCGGCGGTTTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGGTTTAC                                                                                                                                                             <  2:1953551/150‑1                       ttgTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCGGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTGGGAGCGGGTTTACCCGCGAAT                                                                                                                                                     >  1:235499/4‑150                                                    CAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGGTTTACCCGCGAAT                                                                                                                                                     <  2:2107805/121‑1                                                    CAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGGTTTACCCGCGAAT                                                                                                                                                     >  1:2107805/1‑121                                                          CCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGC                                                                                                                                                                     >  1:786027/1‑99                                                          CCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGC                                                                                                                                                                     <  2:786027/99‑1                                                               GGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGGT                                                                                                                                                                 <  1:2422511/98‑1                                                               GGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGGT                                                                                                                                                                 >  2:2422511/1‑98                                                                                                     AAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCC                                                                       >  2:905305/1‑150                                                                                                         CCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTC                                                                   >  1:965146/1‑150                                                                                                         CCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGG                                                                                                                                        <  2:2264715/81‑1                                                                                                         CCGCTCCTATGTGGGCACAAAACGTTGGTTGGGCGCAGGCCGTTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGG                                                                                                                                        >  1:2264715/1‑81                                                                                                                    TGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCG                                                        <  1:905305/150‑1                                                                                                                               CGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCA                                             >  1:2380801/1‑150                                                                                                                                   GGTTGGGCGCAGGCCGTTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCT                                         <  2:2380801/150‑1                                                                                                                                                      TAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAGGCGAA                      >  2:1954386/1‑150                                                                                                                                                         gcGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTCCCATTTCTTTTTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGTCTGGAAGGCAGATCAGGCGAACGG                   <  1:146715/148‑1                                                                                                                                                         GAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAGGCGAACGG                   <  2:1799834/150‑1                                                                                                                                                          AGCNGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAGGCGAACGGG                  >  2:1517764/1‑150                                                                                                                                                          AGCNGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAGGCGAACGGG                  >  2:1518528/1‑150                                                                                                                                                          AGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAGGCGAACGGG                  >  1:155651/1‑150                                                                                                                                                          AGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCAGACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAGGCGAACGGG                  >  1:156254/1‑150                                                                                                                                                           GCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAGGCGAACGGGT                 <  2:1546464/150‑1                                                                                                                                                               GTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCC                                                                             >  1:284305/1‑86                                                                                                                                                               GTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCC                                                                             <  2:284305/86‑1                                                                                                                                                                       GCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAGGCGAACGGGTGACGCAGCACGA     >  1:1537536/1‑150                                                                                                                                                                       GCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAGGCGAACGG                   >  1:1397051/1‑136                                                                                                                                                                       GCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAGGCGAACGG                   <  2:1397051/136‑1                                                                                                                                                                          AATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAGGCGAACGGGTGACGCAGCACGATGG  >  2:1577277/1‑150                                                                                                                                                                                                                                                                                                                                 GGCCCTGAGAAGGGCCGCGGCGTTTTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGGTTTACCCGCGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5557982‑5557811 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taggagcgggtttacccgcgaatACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAAGGCAGATCAGGCGAACGGGTGACGCAGCACGATGG  >  NC_002947/5557893‑5558039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.