| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5689117 = | 88 (0.940) | 7 (0.080) | 7/246 | NT | 7.8% | coding (471/555 nt) | pilI | twitching motility protein PilI |
| ? | NC_002947 | 5689140 = | 79 (0.860) | coding (448/555 nt) | pilI | twitching motility protein PilI | |||||
CTGTTCGTCGGTTTGCTGGTCGACGAGGTGCTGGGCCTTCAGCACTTTGCCCTCGACAGCCTGCAGCTGTCGCCGCCGCAGCCGCTGATCCCTGCCGCTGCACGCTTTGTGCAGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5689233‑5689117‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggCAGGGATCAGCGGCTGCGGCGGCGACAGCTGCAGGCTGTCGAGGGCAAAGTGCTGAAGGCCCAGCACCTCGTCGACCAGCAAACCGACGAACAGGTCGTCGTGATCCAGCACCAGCACTCGCCGCTGCTTGCCCG > NC_002947/5689140‑5689274 CTGTTCGTCGGTTTGCTGGTCGACGAGGTGCTGGGCCTTCAGCACTTTGCCCTCGACAGCCTGCAGCTGTCGCCGCCGCAGCCGCTGATCCCTGCCGCTGCACGCTTTGTGCAGGG < 1:1163321/116‑1CTGTTCGTCGGTTTGCTGGTCGACGAGGTGCTGGGCCTTCAGCACTTTGCCCTCGACAGCCTGCAGCTGTCGCCGCCGCAGCCGCTGATCCCTGCCGCTGCACGCTTTGTGCAGGG > 2:1163321/1‑116 ATCCCTGCCGCTGCACGCTTTGTGCAGGGGCAGGGATCAGCGGCTGCGGCGGCGACAGCTGCAGGCTGTCGAGGGCAAAGTGCTGAAGGCCCAGCAC < 1:1081928/97‑1 ATCCCTGCCGCTGCACGCTTTGTGCAGGGGCAGGGATCAGCGGCTGCGGCGGCGACAGCTGCAGGCTGTCGAGGGCAAAGTGCTGAAGGCCCAGCAC > 2:1081928/1‑97 CTGCCGCTGCACGCTTTGTGCAGGGGCAGGGATCAGCGGCTGCGGCGGCGACAGCTGCAGGCTGTCGAGGGCAAAG < 1:2406127/76‑1 CTGCCGCTGCACGCTTTGTGCAGGGGCAGGGATCAGCGGCTGCGGCGGCGACAGCTGCAGGCTGTCGAGGGCAAAG > 2:2406127/1‑76 GCTGCACGCTTTGTGCAGCGGCAGGGATCAGCGGCTGCGGCGGCGACAGCTGCAGGCTGTCGAGGGCAAAGTGCTGAAGGCCCAGCACCTCGTCGACCAGCAAACCGACGAACAGGTCGTCGTGATCCAGCACCAGCACTCGCCGCTGCT > 2:1955819/1‑150 CACGCTTTGTGCAGGGGCAGGGATCAGCGGCTGCGGCGGCGACAGCTGCAGGCTGTCGAGGGCAAAGTGCTGAAGGCCCAGCACCTCGTCGACCAGCAAACCGACGAACAGGTCGTCGTGATCCAGCACCAGCACTCGCCGCTGCTTGCC > 1:1919091/1‑150 CGCTTTGTGCAGCGGCAGGGATCAGCGGCTGCGGCGGCGACAGCTGCAGGCTGTCGAGGGCAAAGTGCTGAAGGCCCAGCACCTCGTCGACCAGCAAACCGACGAACAGGTCGTCGTGATCCAGCACCAGCACTCGCCGCTGCTTGCCCG < 1:1955819/150‑1 GCAGGGATCAGCGGCTGCGGCGGCGACAGCTGCAGGCTGTCGAGGGCAAAGTGCTGAAGGCCCAGCACCTCGTCGACCAGCAAACCGACGAACAGGT < 1:1636817/97‑1 GCAGGGATCAGCGGCTGCGGCGGCGACAGCTGCAGGCTGTCGAGGGCAAAGTGCTGAAGGCCCAGCACCTCGTCGACCAGCAAACCGACGAACAGGT > 2:1636817/1‑97 CTGTTCGTCGGTTTGCTGGTCGACGAGGTGCTGGGCCTTCAGCACTTTGCCCTCGACAGCCTGCAGCTGTCGCCGCCGCAGCCGCTGATCCCTGCCGCTGCACGCTTTGTGCAGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5689233‑5689117‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggCAGGGATCAGCGGCTGCGGCGGCGACAGCTGCAGGCTGTCGAGGGCAAAGTGCTGAAGGCCCAGCACCTCGTCGACCAGCAAACCGACGAACAGGTCGTCGTGATCCAGCACCAGCACTCGCCGCTGCTTGCCCG > NC_002947/5689140‑5689274 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |