New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5704565 =	100 (1.070)	7 (0.090)	6/198	NT	10.6%	intergenic (+34/+78)	PP_5006/PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2
	?	NC_002947	5704628 =	39 (0.530)					intergenic (+97/+15)	PP_5006/PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2

AGCGCTGCGCCTGCAGCGACCACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5704738‑5704565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttgtaggagcgggtttacccgcgaaGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTGGCCGCTGCCGGTTTGG  >  NC_002947/5704628‑5704776                                                                                                                                                                                                                                                                                                                                     AGCGCTGCGCCTGCAGCGACCACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCT                                                                                                                                                                               >  1:1604042/1‑150  GCGCTGCGCCTGCAGCGACCACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTT                                                                                                                                                                              <  2:187347/150‑1   CGCTGCGCCTGCAGCGACCACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTG                                                                                                                                                                             <  2:686166/150‑1   CGCTGCGCCTGCAGCGACCACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTG                                                                                                                                                                             <  1:559230/150‑1   CGCTGCGCCTGCAGCGACCACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTG                                                                                                                                                                             <  1:1815165/150‑1    GCTGCGCCTGCAGCGACCACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAACCCTTGT                                                                                                                                                                            <  2:1678078/150‑1    GCTGCGCCTGCAGCGACCACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTGT                                                                                                                                                                            <  2:2331667/150‑1     CTGCGCCTGCAGCGACCACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTGTA                                                                                                                                                                           <  1:769954/150‑1     CTGCGCCTGCAGCGACCACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTGTA                                                                                                                                                                           <  1:1907146/150‑1           CTGCAGCGACCACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTCCAAGATGCGCCAAACCTTGTAGGAGCG                                                                                                                                                                     <  1:2155473/150‑1             GCAGCGACCACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGG                                                                                                                                                                   <  1:1903834/150‑1               AGCGACCACAGCACCGGCAACTGCCGCCACCCCGGCCAGTAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTT                                                                                                                                                                 <  1:830062/150‑1                GCGACCACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTT                                                                                                                                                                >  1:130873/1‑150                 CGACCACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTA                                                                                                                                                               <  1:1267716/150‑1                    CCACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCC                                                                                                                                                            <  1:1671540/150‑1                      cCAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGCTGCGCCAAACCTTGTAGGAGCGGGTTTACCCGC                                                                                                                                                          <  1:1291825/149‑1                                      CCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTG                                                                                                                                                                             >  2:637450/1‑115                                      CCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTG                                                                                                                                                                             <  1:637450/115‑1                                                                                                                            CCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGG                                                                                >  1:1529916/1‑122                                                                                                                            CCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGG                                                                                <  2:1529916/122‑1                                                                                                                               GCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGGGGCGGCAGTTGCCGGTGCGGTGGTCGCTGCAGG                                                 >  2:407168/1‑150                                                                                                                               GCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACG                                                                                                     <  1:1721196/98‑1                                                                                                                               GCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACG                                                                                                     >  2:1721196/1‑98                                                                                                                                   CTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGT                                                             <  1:2403359/134‑1                                                                                                                                   CTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGT                                                             >  2:2403359/1‑134                                                                                                                                   CTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAA                                                                                                                                                       <  1:229310/44‑1                                                                                                                                   CTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAA                                                                                                                                                       >  2:229310/1‑44                                                                                                                                                  catnTTGTAGGAGCGGGTTTCCCCGCGAAGCAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGGCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGGAGTTGCCGGGGCAGTGGGCGCTGCAGGCGCAGCGCTGGCAGCTGGg                              >  2:1506276/5‑149                                                                                                                                                     CTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCT                                                      <  2:8302/123‑1                                                                                                                                                     CTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCT                                                      >  1:8302/1‑123                                                                                                                                                     CTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCCAGCTGCAGCGCGGGGCGGTGGCAGGGGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCGGGTGCT                           >  1:877217/1‑150                                                                                                                                                      TTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCCGGCGCTGCGCTGTCAGCTGGTGCTG                          >  2:549826/1‑150                                                                                                                                                        GTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCT                        >  2:1622363/1‑150                                                                                                                                                         TAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTG                       <  2:794031/150‑1                                                                                                                                                           GGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGT                     >  2:640339/1‑150                                                                                                                                                           GGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGT                     <  1:1406815/150‑1                                                                                                                                                             AGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTACTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTT                   <  2:830062/150‑1                                                                                                                                                              GCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTG                  <  1:187347/150‑1                                                                                                                                                              GCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTG                  <  2:1125856/150‑1                                                                                                                                                               CGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTGG                 <  2:396453/150‑1                                                                                                                                                               CGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTGG                 <  2:1267716/150‑1                                                                                                                                                                 GGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTGGCC               <  1:1328243/150‑1                                                                                                                                                                  GTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCTTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTGGCCG              >  2:117421/1‑150                                                                                                                                                                  GTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTGGCCG              >  1:1323341/1‑150                                                                                                                                                                   TTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTGGCCGC             >  1:1370357/1‑150                                                                                                                                                                    TTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTGGCCGCT            <  1:2054522/150‑1                                                                                                                                                                       CCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTGGCCGCTGCC         <  1:426064/150‑1                                                                                                                                                                        CCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTGGCCGCTGCCG        >  1:1192515/1‑150                                                                                                                                                                        CCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTCGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGCTGCTGCTGGTTTGGCCGCTGCCG        <  2:1192515/150‑1                                                                                                                                                                              AGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTGGCCGCTGCCGGTTTGG  <  1:450242/150‑1                                                                                                                                                                              AGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGATTTAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTGGCCGCTGCCGGTTTGG  <  1:1358057/150‑1                                                                                                                                                                                                                                                                                                                                     AGCGCTGCGCCTGCAGCGACCACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5704738‑5704565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttgtaggagcgggtttacccgcgaaGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTGGCCGCTGCCGGTTTGG  >  NC_002947/5704628‑5704776

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.