New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5751735 =	83 (0.890)	8 (0.090)	6/238	NT	9.9%	intergenic (‑117/‑354)	thiI/glnA	tRNA sulfurtransferase/glutamine synthetase
	?	NC_002947	5751793 =	66 (0.740)					intergenic (‑175/‑296)	thiI/glnA	tRNA sulfurtransferase/glutamine synthetase

CTACGGGCTTTGCACCGCCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGCGCTGCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5751800‑5751735 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaaaGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCTAGAACCTGGCACACCACTCACGCCACGCACCCTATTGGTGCGACACGATCAAAAAACGCATCGTAAGGGTGCACTTTCACCCGCTAACCCAACGCCAAATGCACGCAAACGCC  >  NC_002947/5751793‑5751940                                                                                                                                                                                                                        CTACGGGCTTTGCACCGCCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGCGCTGCAAAGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCTAGAACCTGGCACACCACTCACGCCACGCACCCTATTGGTGCGACACGAT                                                                  >  1:617644/1‑150       GCTTTGCACCGCCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGCGCTGCAAAGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCTAGAACCTGGCACACCACTCACGCCACGCACCCTATTGGT                                                                            >  1:1654656/1‑134       GCTTTGCACCGCCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGCGCTGCAAAGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCTAGAACCTGGCACACCACTCACGCCACGCACCCTATTGGT                                                                            >  1:452478/1‑134       GCTTTGCACCGCCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGCGCTGCAAAGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCTAGAACCTGGCACACCACTCACGCCACGCACCCTATTGGT                                                                            <  2:1654656/134‑1       GCTTTGCACCGCCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGCGCTGCAAAGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCTAGAACCTGGCACACCACTCACGCCACGCACCCTATTGGT                                                                            <  2:452478/134‑1            GCACCGCCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGCGGTGCAAAGCCAGTAGGAGCGGGTTTACCCGCGAAGAGGCCCTAGAACCTG                                                                                                           <  1:1099149/98‑1            GCACCGCCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGCGGTGCAAAGCCAGTAGGAGCGGGTTTACCCGCGAAGAGGCCCTAGAACCTG                                                                                                           >  2:1099149/1‑98             CACCGCCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGCGCTGCAAAGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCTAGAACCTGGCACACCACTCACGCCACGCACCCTATTGGTGCGACACGATCAAAAAACGCAT                                                      <  2:617644/150‑1                                                                AAAGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCTAGAACCTGGCACACCACTCACGCCACGCACCCTATTGGTGCGACACGATCAAAAAACGCATCGTAAGGGTGCACTTTCACCCGCTAACCCAACGCCAAATGCACGCAAACGC   >  2:1640399/1‑150                                                                 AAGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCTAGAACCTGGCACACCACTCACGCCACGCACCCTATTGGTGCGACACGATCAAAAAACGCATCGTAAGGGTGCACTTTCACCCGCTAACCCAACGCCAAATGCACGCAAACGCC  >  2:1614830/1‑150                                                                                                                                                                                                                        CTACGGGCTTTGCACCGCCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGCGCTGCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5751800‑5751735 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaaaGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCTAGAACCTGGCACACCACTCACGCCACGCACCCTATTGGTGCGACACGATCAAAAAACGCATCGTAAGGGTGCACTTTCACCCGCTAACCCAACGCCAAATGCACGCAAACGCC  >  NC_002947/5751793‑5751940

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.