New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5765441	120 (1.290)	7 (0.080)	6/236	NT	5.8%	coding (41/768 nt)	PP_5059	hypothetical protein
	?	NC_002947	= 5765457	114 (1.290)					coding (57/768 nt)	PP_5059	hypothetical protein

GCCCGACCGGCAGCAGCAAGCGCAAGGAACGCCCGCAGGATGACGACTTCCAGCTGAGCCAGGCACTGAGCCTGCTCAAGGGCCTGAACATCACCAAGGGCGACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5765286‑5765441 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccggTGCCGCTTGCGCGATTCCGGCCATCAGGCAAAACAACAGACACAGCAGATAACGCATAGGGTGGCTCAGTCGCCCTTGGTGATGTTCAGGCCCTTGAGCAGGCTCAGTGCCTGGCTCAGCTGGAAGTCGTCATCCTGCGGGCGTTCCTT  <  NC_002947/5765457‑5765309                                                                                                                                                                                                                                                                                                                   GCCCGACCGGCAGCAGCAAGCGCAAGGAACGCCCGCAGGATGACGACTTCCAGCTGAGCCAGGCACTGAGCCTGCTCAAGGGCCTGAACATCACCAAGGGCGACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGAT                                                                                                                                                             <  1:279035/150‑1  CCCGACCGGCAGCAGCAAGCGCAAGGAACGCCCGCAGGATGACGACTTCCAGCTGAGCCAGGCACTGAGCCTGCTCAAGGGCCTGAACATCACCAAGGGCGACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATG                                                                                                                                                            >  2:1015681/1‑150   CCGACCGGCAGCAGCAAGCGCAAGGAACGCCCGCAGGATGACGACTTCCAGCTGAGCCAGGCACTGAGCCTTCGCAAGGGCCTGAACATCACCAAGGGCGACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGG                                                                                                                                                           >  1:765520/1‑150   CCGACCGGCAGCAGCAAGCGCAAGGAACGCCCGCAGGATGACGACTTCCAGCTGAGCCAGGCACTGAGCCTGCTCAAGGGCCTGAACATCACCAAGGGCGACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGG                                                                                                                                                           >  1:215018/1‑150     GACCGGCAGCAGTAAGCGCAAGGAACGCCCGCAGGATGACGACTTCCAGCTGAGCCAGGCACTGAGCCTGCTCAAGGGGCTGAACAACACCCAGGGCGCTTGCGCCACCCTATGCGTTAACTGCTGTGTCTTTTGTTTTGCCTGATGGCC                                                                                                                                                         <  2:1330449/150‑1     GACCGGCAGCAGCAAGCGCAAGGAACGCCCGCGGGATGACGACTTCCAGCTGGGCCAGGCACTGAGCCTGCTCAAGGGCCTGAACATCACCAAGGGCGACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCC                                                                                                                                                         <  2:351292/150‑1     GACCGGCAGCAGCAAGCGCAAGGAACGCCCGCAGGATGACGACTTCCAGCTGAGCCAGGCACTGAGCCTGCTCAAGGGCCTGAACATCACCAAGGGCGACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCC                                                                                                                                                         <  1:1015681/150‑1                               GCCCGCAGGATGACGACTTCCAGCTGAGCCAGGCACTGAGCCTGCTCAAGGGCCTGAACATCACCAAGGGCGACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCCGGTGCCGCTTGCGCGATTCCGGCCAT                                                                                                                               <  2:1489644/150‑1                                                           CCAGGCACTGAGCCTGCTCAAGGGCCTGAACATCACCAAGGGCGACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCCGGTGCCGCTTGCGCGATTCCGGCCATCAG                                                                                                                            <  1:1401657/125‑1                                                           CCAGGCACTGAGCCTGCTCAAGGGCCTGAACATCACCAAGGGCGACTGAGCAACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCCGGTGCCGCTTGCGCGATTCCGGCCATCAG                                                                                                                            >  2:1401657/1‑125                                                                            TCAAGGGCCTGAACATCACCAAGGGCAACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCCGGTGCCGCTTGCGCGATTCCGG                                                                                                                                   >  1:1604213/1‑101                                                                            TCAAGGGCCTGAACATCACCAAGGGCAACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCCGGTGCCGCTTGCGCGATTCCGG                                                                                                                                   <  2:1604213/101‑1                                                                                                      GACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCCGGTGCCGCTTGCGCGATTCCGGCCATCAG                                                                                                                            >  1:1383292/1‑82                                                                                                      GACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCCGGTGCCGCTTGCGCGATTCCGGCCATCAG                                                                                                                            <  2:1383292/82‑1                                                                                                                                                        GCCGGTGCCGCTTGCGCGATTCCGGCCATCAGGCAAAACAACAGACACAGCAGATAACGCATAGGGT                                                                                         >  1:2062652/1‑67                                                                                                                                                        GCCGGTGCCGCTTGCGCGATTCCGGCCATCAGGCAAAACAACAGACACAGCAGATAACGCATAGGGT                                                                                         <  2:2062652/67‑1                                                                                                                                                          CGGTGCCGCTTGCGCGATTCCGGCCATCAGGCAAAACAACAGACACAGCAGATAACGCATAGGGTGGCTCAGTCGCCCTTGGTGATGTTCAGGCCCTTGAGCAGGCTCAGTGCCTGGCTCAGCTGGAAGTCGTCATCCTGCGGGCGTTCC    <  2:2383947/150‑1                                                                                                                                                          CGGTGCCGCTTGCGCGATTCCGGCCATCAGGCAAAACAACAGACACAGCAGATAACGCATAGGGTGGCTCAGTCGCCCTTGGTGATGTTCAGGCCCTTGAGCAGGCTCAGTGCCTGGCTCAGCTGGAAGTCGTCATCCTGCGGGCGTTCC    >  2:71747/1‑150                                                                                                                                                            GTGCCGCTTGCGCGATTCCGGCCATCAGGCAAAACAACAGACACAGCAGATAACGCATAGGGTGGCTCAGTCGCCCTTGGTGATGTTCAGGCCCTTGAGCAGGCTCAGTGCCTGGCTCAGCTGGAAGTCGTCATCCTGCGGGCGTTCCTT  <  2:1886337/150‑1                                                                                                                                                            GTGCCGCTTGCGCGATTCCGGCCATCAGGCAAAACAACAGACACAGCAGATAACGCATAGGGTG                                                                                        >  2:1482219/1‑64                                                                                                                                                            GTGCCGCTTGCGCGATTCCGGCCATCAGGCAAAACAACAGACACAGCAGATAACGCATAGGGTG                                                                                        <  1:1482219/64‑1                                                                                                                                                            GTGCCGCTTGCGCGATTCCGGCCATCAGGCAAAACAACAGACACAGCAGATAACGCATAGGGGGGCTCAGTCGCCCTTGGTGATGTTCAGGCCCTTGAGCAGGCTCAGTGCCTGGCTCAGCTGGAAGTCGTCATCCTGCGGGCGTTCCTT  >  2:195318/1‑150                                                                                                                                                                                                                                                                                                                   GCCCGACCGGCAGCAGCAAGCGCAAGGAACGCCCGCAGGATGACGACTTCCAGCTGAGCCAGGCACTGAGCCTGCTCAAGGGCCTGAACATCACCAAGGGCGACTGAGCCACCCTATGCGTTATCTGCTGTGTCTGTTGTTTTGCCTGATGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5765286‑5765441 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccggTGCCGCTTGCGCGATTCCGGCCATCAGGCAAAACAACAGACACAGCAGATAACGCATAGGGTGGCTCAGTCGCCCTTGGTGATGTTCAGGCCCTTGAGCAGGCTCAGTGCCTGGCTCAGCTGGAAGTCGTCATCCTGCGGGCGTTCCTT  <  NC_002947/5765457‑5765309

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.