New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5796767 | 100 (1.070) | 7 (0.080) | 7/238 | NT | 6.8% | coding (1189/4446 nt) | gltB | L‑glutamate synthase subunit alpha |
? | NC_002947 | = 5796785 | 96 (1.080) | coding (1171/4446 nt) | gltB | L‑glutamate synthase subunit alpha |
TGGCCACACCCTGGTCGTCGGTCAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5796614‑5796767 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggccAAGGGCCGTGTCGGCCCGGGCCAGATCCTTGCCGTGGACACCGAAACCGGCCAGATCCTCGACACCGACGCCATCGACAACCGCCTGAAGTCGCGCCACCCGTACAAGCGCTGGCTGCGTCAGCACGCCACCCGCATCCAGGCGACGCT < NC_002947/5796785‑5796637 TGGCCACACCCTGGTCGTCGGTCAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCT < 2:57602/150‑1 TGGCCACACCCTGGTCGTCGGTCAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGAACT > 2:423379/1‑150 GGCCACACCCTGGTCGTGGGTCAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTG < 2:861590/150‑1 GGCCACACCCTGGTCGTCGGTCAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTG < 1:1665971/150‑1 GGCCACACCCTGGTCGTCGGTCAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTG > 2:411635/1‑150 GGCCACACCCTGGTCGTCGGTCAGCGTCGCCTGGATGCGCCTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTG < 1:981939/150‑1 GCCACACCCTGGTCGTCGGTCAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGG > 2:256170/1‑150 CCCTGGTCGTCGGTCAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCT < 1:477800/142‑1 CCCTGGTCGTCGGTCAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCT > 2:477800/1‑142 GATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGAGCTGGCCAAGGGCCGTGTCGGCCCGGGCCAGATCCTT < 1:2416760/150‑1 CGTGCTGACGCAGCCAGCGCTTGTACGGGTAGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCAAGGGCCGTGTCGGCCCGGGCCAGA > 2:1659781/1‑134 CGTGCTGACGCAGCCAGCGCTTGTACGGGTAGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCAAGGGCCGTGTCGGCCCGGGCCAGA < 1:1659781/134‑1 GGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCAAGGGCCGTGTCGGCCCGGGCCAGAT < 1:356674/109‑1 GGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCAAGGGCCGTGTCGGCCCGGGCCAGAT > 2:356674/1‑109 GAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCAAGGGCCGTGTCGGCCCGGGCCAGATCCTTG < 2:253714/73‑1 GAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCAAGGGCCGTGTCGGCCCGGGCCAGATCCTTG > 1:253714/1‑73 TCTGGCCAAGGGCCGTGTCGGCCCGGGCCAGATCCTTGCCGTGGACACCGAAACCGGCCAGATCCTCGACACCGACGCCATCGACAACCGCCTGAAGTCGCGCCACCCGTACAAGCGCTGGCTGCGTCAGCA < 2:1872776/132‑1 TCTGGCCAAGGGCCGTGTCGGCCCGGGCCAGATCCTTGCCGTGGACACCGAAACCGGCCAGATCCTCGACACCGACGCCATCGACAACCGCCTGAAGTCGCGCCACCCGTACAAGCGCTGGCTGCGTCAGCA > 1:1872776/1‑132 CCAAGGGCCGTGTCGGCCCGGGCCAGATCCTTGCCGTGGACACCGAAACCGGCCAGATCCTCGACACCGACGCCATCGACAACCGCCTGAAGTCGCGCCACCCGTACAAGCGCTGGCTGCGTCAGCACGCCACCCGCATCCAGGCGACGC > 2:2267349/1‑150 CAAGGGCCGTGTCGGCCCGGGCCAGATCCTTGCCGTGGACACCGAAACCGGCCAGATCCTCGACACCGACGCCATCGACAACCGCCTGAAGTCGCGCCACCCGTACAAGCGCTGGCTGCGTCAGCACGCCACCCGCATCCAGGCGACGCT > 1:411635/1‑150 TGGCCACACCCTGGTCGTCGGTCAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5796614‑5796767 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggccAAGGGCCGTGTCGGCCCGGGCCAGATCCTTGCCGTGGACACCGAAACCGGCCAGATCCTCGACACCGACGCCATCGACAACCGCCTGAAGTCGCGCCACCCGTACAAGCGCTGGCTGCGTCAGCACGCCACCCGCATCCAGGCGACGCT < NC_002947/5796785‑5796637 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |