New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5854121 | 91 (0.980) | 9 (0.100) | 9/246 | NT | 8.9% | coding (85/1392 nt) | tcyP | sodium/cystine symporter |
? | NC_002947 | = 5854146 | 95 (1.030) | coding (110/1392 nt) | tcyP | sodium/cystine symporter |
AGGCGATGCCACTTCTGCTTTTTTCTGCTGGAGCTTCAATGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5853999‑5854121 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccAGGCCAAGCA‑GTACCTTCTTGGCCAGGCTCCAGTCGGTGCGGCGGGTTTGTGCCAGACCCAGCAACAGGGCCAGGAACGCCAGCAGGTTGAGTGACAGCGGCAGGTTCATTGAAGCTCCAGCAGAAAAAAGCAGAAGTGGCATCGCCT < NC_002947/5854146‑5853999 AGGCGATGCCACTTCTGCTTTTTTCTGCTGGAGCTTCAATGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCGCAAACCCGCCGCACCGACTGGAGCCTGGCCAAGCA‑GTACCTTCTTGGCCAGG < 2:1448901/150‑1 TTTTTTCTGCTGGAGCTTCAATGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGCA‑GTACCTTCTTGGCCAG > 1:1986909/1‑131 TTTTTTCTGCTGGAGCTTCAATGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCTGGCCAAGCA‑GTACCTTCTTGGCCAG < 2:1986909/131‑1 AACCTGCCGCTGTCATTCAACCTGCTGGCGTTCCTGGCCCTGTGGCTGGGTCTGGCACTAACCCGCCGCACCGACTGGAGCCAGGCCAAGCA‑GTACCTTCTTGGCCAGGCTCCAG < 2:1262205/115‑1 GCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCAGGCCAAGCA‑GTACCTTCTTGGCCA > 1:839758/1‑71 GCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCCAGGCCAAGCA‑GTACCTTCTTGGCCA < 2:839758/71‑1 CCGACTGGAGCCTGGCCAAGAAGGTA‑CTGCTTGGCCTGGCTCCAGTCGGTGCGGCGGGTTTGTGCCAGACCCAGCAACAGGGCCAGGAACGCCAGCAGGTTGAGTGACAGCGGCAGGTTCATT < 1:1689519/123‑1 CCGACTGGAGCCTGGCCAAGAAGGTA‑CTGCTTGGCCTGGCTCCAGTCGGTGCGGCGGGTTTGTGCCAGACCCAGCAACAGGGCCAGGAACGCCAGCAGGTTGAGTGACAGCGGCAGGTTCATT > 2:1689519/1‑123 CTGGAGCCTGGCCAAGAA‑GGTACTGCTTGGCCTGGCTCCAGTCGGTGCGGCGGGTTTGTGCCAGACCCAGCAACAGGGCCAGGAACGCCAGCAGGTTGAGTGACAGCGGCAGGTT < 1:1262205/115‑1 CCAGGCCAAGCA‑GTACCTTCTTGGCCAGGCTCCAGTCGGTGCGGCGGGTTTGTGCCAGACCCAGCAACAGGGCCAGGAACGCCAGCAGGTTGAGTGACAGCGGCAGGTTCATTGAAGCTCCAGCAGAAAAAAGCAGAAGTGGCATCGCCT > 2:796399/1‑150 CAGGCCAAGCA‑GTACCTTCTTGGCCAGGCTCCAGTCGGTGCGGCGGGTTTGTGCCAGACCCAGCAACAGGGCCAGGAACGCCAGCAGGTTGAGTGACAGCGGCAGGTTCATTGAAGCTCCAGCAGAAAAAAGCAGAAGTGGCATCGCCT > 1:485980/1‑149 CAGGCCAAGCA‑GTACCTTCTTGGCCAGGCTCCAGTCGGTGCGGCGGGTTTGTGCCAGACCCAGCAACAGGGCCAGGAACGCCAGCAGGTTGAGTGACAGCGGCAGGTTCATTGAAGCTCCAGCAGAAAAAAGCAGAAGTGGCATCGCCT < 2:485980/149‑1 CAGGCCAAGCA‑GTACCTTCTTGGCCAGGCTCCAGTCGGTGCGGCGGGTTTGTGCCAGACCCAGCAACAGGGCCAGGAACGCCAGCAGGTTGAGTGACAGCGGC < 1:491628/103‑1 CAGGCCAAGCA‑GTACCTTCTTGGCCAGGCTCCAGTCGGTGCGGCGGGTTTGTGCCAGACCCAGCAACAGGGCCAGGAACGCCAGCAGGTTGAGTGACAGCGGC > 2:491628/1‑103 AGGCGATGCCACTTCTGCTTTTTTCTGCTGGAGCTTCAATGAACCTGCCGCTGTCACTCAACCTGCTGGCGTTCCTGGCCCTGTTGCTGGGTCTGGCACAAACCCGCCGCACCGACTGGAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5853999‑5854121 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccAGGCCAAGCA‑GTACCTTCTTGGCCAGGCTCCAGTCGGTGCGGCGGGTTTGTGCCAGACCCAGCAACAGGGCCAGGAACGCCAGCAGGTTGAGTGACAGCGGCAGGTTCATTGAAGCTCCAGCAGAAAAAAGCAGAAGTGGCATCGCCT < NC_002947/5854146‑5853999 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |