| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6002402 = | 115 (1.230) | 11 (0.140) | 8/218 | NT | 10.1% | intergenic (‑46/+100) | amaA/amaB | L‑pipecolate oxidase/L‑piperidine‑6‑carboxylate dehydrogenase |
| ? | NC_002947 | 6002454 = | 96 (1.180) | intergenic (‑98/+48) | amaA/amaB | L‑pipecolate oxidase/L‑piperidine‑6‑carboxylate dehydrogenase | |||||
GCCAGACCAACACCGTGAACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6002566‑6002402‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtaggagcgggtCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGA > NC_002947/6002454‑6002600 GCCAGACCAACACCGTGAACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACC > 2:1734856/1‑150GCCAGACCAACACCGTGAACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACC > 2:481901/1‑150 CCAGACCAACACCGTGAACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCC > 2:868097/1‑150 CCAGACCAACACCGTGAACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCC > 1:2256192/1‑150 CAGACCAACACCGTGAACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCC > 1:170868/1‑150 AGACCAACACCGTGAACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCT < 2:1311078/150‑1 AGACCAACACCGTGAACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCT > 2:741795/1‑150 CCAACACCGTGAACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTA < 1:209058/150‑1 CAACACCGTGAACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAG > 2:376464/1‑150 AACACCGTGAACTGCTCATGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGG > 1:1901500/1‑150 AACACCGTGAACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGG > 1:684654/1‑150 ACCGTGAACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGC < 1:1354558/150‑1 CGTGAACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGG < 2:1114667/150‑1 GTGAACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGG < 1:376464/150‑1 CCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACG > 2:1115538/1‑150 CCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCAC < 1:2188368/149‑1 CCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCAC > 2:2188368/1‑149 CCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCA > 2:891095/1‑148 CCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCA < 1:891095/148‑1 CTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTG > 1:164374/1‑150 ACAGGGTTCGTCTAAGCGACACCGACCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGT > 2:2206238/1‑150 ACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTA > 1:119750/1‑135 ACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTA < 2:119750/135‑1 AGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCT > 2:1801418/1‑150 ACCGACCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTT < 1:1801418/150‑1 CCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGG > 2:820606/1‑150 CCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGC > 1:38757/1‑150 CCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGC > 2:1114106/1‑94 CCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGC < 1:1114106/94‑1 TGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCCTCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCAT > 2:326885/1‑150 GGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGA < 1:2163815/150‑1 GAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAG < 1:271958/150‑1 GAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAG > 1:1247284/1‑150 GCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGGACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGGTCACGGTGTTGGTCTGGCGGCGCAGGGAGCCTTTCCCGGCAGACGAGCC > 2:794303/1‑150 GGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGA < 2:1354558/150‑1 GTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGT < 1:1911585/110‑1 GTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGT > 2:1911585/1‑110 GTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAA < 1:2067199/59‑1 GTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAA > 2:2067199/1‑59 GCCAGACCAACACCGTGAACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6002566‑6002402‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtaggagcgggtCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGA > NC_002947/6002454‑6002600 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |