New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6087630 =	98 (1.050)	5 (0.060)	5/222	NT	6.6%	intergenic (+25/‑205)	oruR/aphA	ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase
	?	NC_002947	6087692 =	55 (0.660)					intergenic (+87/‑143)	oruR/aphA	ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase

CTGATCAGCAGGGGAGAACGACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6087792‑6087630 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggttCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACA  >  NC_002947/6087692‑6087831                                                                                                                                                                                                                                                                                                                 CTGATCAGCAGGGGAGAACGACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGGCCCT                                                                                                                                                           <  2:747267/150‑1  TGATCAGCAGGGGAGAACGACGCAAACGGCCAAAAGGGGATTAATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTG                                                                                                                                                          <  1:1096732/150‑1    ATCAGCAGGGGAGAACGACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTA                                                                                                                                                        >  2:1323771/1‑150     TCAGCAGGGGAGAACGACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAG                                                                                                                                                       <  1:1323771/150‑1       AGCAGGGGAGAACGACGCAAACGGCCAAAAGGGGATTGCTATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAAGGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGA                                                                                                                                                     <  2:311648/150‑1       AGCAGGGGAGAACGACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGA                                                                                                                                                     <  1:1153794/150‑1        GCAGGGGAGAACGACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAG                                                                                                                                                    >  1:388491/1‑150         CAGGGGAGAACGACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGC                                                                                                                                                   >  1:242175/1‑150          AGGGGAGAACGACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCG                                                                                                                                                  >  2:2151290/1‑150           GGGGAGAACGACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGG                                                                                                                                                 <  1:1727169/150‑1           GGGGAGAACGACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGG                                                                                                                                                 <  2:388491/150‑1           GGGGAGAACGACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGG                                                                                                                                                 <  2:2148195/150‑1            GGGAGAACGACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACTTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGG                                                                                                                                                <  1:410835/150‑1            GGGAGAACGACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGG                                                                                                                                                >  2:1809886/1‑150             GGAGAACGACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGT                                                                                                                                               >  1:2306137/1‑150                    GACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAG                                                                                                                                                    >  1:2364128/1‑138                    GACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAG                                                                                                                                                    <  2:2364128/138‑1                                                           TTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGA                                                                                                                                                     >  2:604973/1‑98                                                           TTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGA                                                                                                                                                     <  1:604973/98‑1                                                                                        CCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCG                                                                    >  1:702561/1‑150                                                                                                        CCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCC                                                    >  2:1889172/1‑150                                                                                                         CCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTT                                                                         >  2:1411427/1‑128                                                                                                         CCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTT                                                                         <  1:1411427/128‑1                                                                                                                                        GGTTGTGACGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGC                    <  2:702561/150‑1                                                                                                                                                          gtAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACA  >  1:700892/3‑150                                                                                                                                                          GGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTC                                                            <  2:962238/92‑1                                                                                                                                                          GGAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTC                                                            >  1:962238/1‑92                                                                                                                                                           GAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATAT                                                                                     >  2:2099707/1‑66                                                                                                                                                           GAGCGGGTTCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATAT                                                                                     <  1:2099707/66‑1                                                                                                                                                                                                                                                                                                                 CTGATCAGCAGGGGAGAACGACGCAAACGGCCAAAAGGGGATTGATATGGCCAAGGTCTTTGGCCGGATGGGTGGTGACCTATCCGGCCTTTTCGCGGGTGAACCCGCTCCTACAATGGCCACCAGGGCGTCAGGGGTTGTGACGCCCCTGTAGGAGCGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6087792‑6087630 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggttCACCCGCGAAAAGGCCGGATAGGTCACCACCCATCCGGCCAAAGACCTTGGCCATATCAATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCCTGCTGATCAGCCCATGACAATGGACCCACGCCAGTCCCACCGGAGAACA  >  NC_002947/6087692‑6087831

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.