| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6173352 | 195 (2.090) | 5 (0.060) | 4/240 | NT | 2.6% | coding (1343/1368 nt) | glmU | bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase |
| ? | NC_002947 | = 6173359 | 186 (2.080) | coding (1336/1368 nt) | glmU | bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTCAAGCTGTCGCTGACCTGTGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGCTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6173199‑6173352‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggcTGGAAGCGCCCGGAGAAGATCAAGAAGAGCTGAGTTATTCACAGCCCTTTCCATCGAAAGCCGACTTATGTGAATAAGTCGGCTTTTTTATTGGCGCGGCTGCGCCTATAGGACCGCCTCAAAGCAGAAGCAAACAATCCACAGGTCAG < NC_002947/6173359‑6173211 GTCAAGCTGTCGCTGACCTGTGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGTCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGCTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCC > 2:39670/1‑150 TCAAGCTGTCGCTGACCTGTGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGCTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCG > 1:1877995/1‑150 TCAAGCTGTCGCTGACCTGTGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGCTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCG > 1:2442554/1‑150 CAAGCTGTCGCTGACCTGTGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGCTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGG > 1:1788861/1‑150 AAGCTGTCGCTGACCTGTGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGCTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGG < 2:2382768/150‑1 AAGCTGTCGCTGACCTGTGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGCTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGG < 2:1100770/150‑1 AAGCTGTCGCTGACCTGTGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGCTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGG < 2:1103715/150‑1 AGCTGTCGCTGACCTGTGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGCTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGC < 2:1690684/150‑1 CTGACCTGTGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGCTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGG > 1:2398633/1‑141 CTGACCTGTGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGCTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGG < 2:2398633/141‑1 CTGTGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGCTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGG < 1:201145/135‑1 CTGTGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGCTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGG > 2:201145/1‑135 GGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGCTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCTGGAAGCGCCCGGAGAA < 2:1877401/150‑1 TTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGCTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCG < 1:1928823/127‑1 TTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGCTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCG > 2:1928823/1‑127 GCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGGCAATAAAAAAGCCGACTTATTCACATAAGTCGGCTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGC > 1:2299087/1‑124 GCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGCTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGC < 2:2299087/124‑1 CGGCTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCTGGAAGCGCCCGGAGAA < 1:2157775/73‑1 CGGCTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCTGGAAGCGCCCGGAGAA > 2:2157775/1‑73 AAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCTGGAAGCGCCCGGAGAAGAT > 2:1063825/1‑63 AAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCTGGAAGCGCCCGGAGAAGAT < 1:1063825/63‑1 GGCTGGAAGCGCCCGGAGAAGATCAAGAAGAGCTGAGTTATTCACAGCCCTTTCCATCGAAAGCCGACTTATGT < 1:258403/74‑1 GGCTGGAAGCGCCCGGAGAAGATCAAGAAGAGCTGAGTTATTCACAGCCCTTTCCATCGAAAGCCGACTTATGT > 2:258403/1‑74 CTGGAAGCGCCCGGAGAAGATCAAGAAGAGCTGAGTTATTCACAGCCCTTTCCATCGAAAGCCGACTTATGTGAATAAGTCGGCTTTTTTATTGGCGCGGCTGCGCCTATAGGACCGCCTCAAAGCAGAAGCAAACAATCCACAGGTCAG > 2:1006103/1‑150 GTCAAGCTGTCGCTGACCTGTGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGCTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6173199‑6173352‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggcTGGAAGCGCCCGGAGAAGATCAAGAAGAGCTGAGTTATTCACAGCCCTTTCCATCGAAAGCCGACTTATGTGAATAAGTCGGCTTTTTTATTGGCGCGGCTGCGCCTATAGGACCGCCTCAAAGCAGAAGCAAACAATCCACAGGTCAG < NC_002947/6173359‑6173211 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |