New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1296580 =	NA (NA)	18 (0.210)	18/232	NT	NA	intergenic (‑327/‑239)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	1296616 =	NA (NA)					intergenic (‑363/‑203)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase

GGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGTTC  >  NC_002947/1296431‑1296630                                                                                                                                                      |                                                   tgACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGAACATTGTTCCGTGTAGGAGATCACCCCGCCCTTCAGGGCTGCGCTGTCGCACAGCAAACATGAGGAGTACGGCGGCAGTTCCGCATCGGGGCGGACATTTTGAaaaaga                                                    >  1:1542851/2‑150 (MQ=25)   aCCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAaaaagaaa                                                  <  1:1929316/150‑1 (MQ=255)     cGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGGTCCGCAGCGACGCTGACATTTTGAaaaagaaaag                                                >  1:1075859/1‑150 (MQ=255)       ggCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGc                                              <  1:563005/150‑1 (MQ=255)          ccTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGt                                           <  2:1789171/150‑1 (MQ=255)          ccTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGt                                           >  1:902583/1‑150 (MQ=255)          ccTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACACAGCCCTTCCGGGCTGCACGTGCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGt                                           >  1:885351/1‑150 (MQ=18)           cTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAaaaagaaaa                                                 >  1:130662/1‑143 (MQ=255)           cTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAaaaagaaaa                                                 <  2:130662/143‑1 (MQ=255)            tttCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTg                                         <  2:1061034/150‑1 (MQ=255)            tttCGCGGGTAAACCCGCTCCTACAGGGGACCAATGCCGCGTGAAGGTATTCAGCTTGCCATGCCGGGGTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTg                                         >  1:1864684/1‑150 (MQ=17)                  gggTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACGAAGCCTTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCgg                                   >  2:928619/1‑150 (MQ=255)                  gggTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCgg                                   >  2:1962608/1‑150 (MQ=255)                   ggTAAACCCGCTCCTAACGGAGCCGCTTGCTCCGGGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGCTGGccctac                                  <  2:1135048/150‑4 (MQ=11)                      aaaCCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAgg                               <  2:1910758/150‑1 (MQ=255)                       accccGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGAGACGCTGACATTTGGAAAAAGAAAAGGCGGTTGGCCCGGTAggg                              <  1:1391874/148‑1 (MQ=255)                       aaCCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTACGGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAggg                              <  1:1973546/150‑1 (MQ=255)                         cccGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGcc                            >  2:884722/1‑150 (MQ=255)                          ccGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCa                           <  2:1895350/150‑1 (MQ=255)                            gCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAgc                         >  2:369624/1‑150 (MQ=255)                                cTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAgccgcc                     <  1:2321798/150‑1 (MQ=255)                                  aCAGGGGACCATTGTTCCGTGGAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCtt                   >  2:2041057/1‑150 (MQ=255)                                      gggACCATTGTTCCTTGTAGGAGATCACCCAGCCCTTCCGGGTTGCGCTGTCGCGCAGCAAACATGATATGTACGGCTTTAGTTCCGCAGCCACGCTGACATTTTGAAAAAGAAAAGGCGGTTTGCCCGGTAGTGTCATCCACCtcttac               <  2:1004571/150‑3 (MQ=14)                                        gACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCtt             >  2:2361276/1‑150 (MQ=40)                                         aCCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTTCGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCttt            >  2:2130472/1‑150 (MQ=255)                                         aCCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTTAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCttt            <  1:369624/150‑1 (MQ=255)                                          ccATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTg           >  1:1186262/1‑150 (MQ=38)                                           cATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAaaaagaaa                                                  >  1:1303664/1‑110 (MQ=40)                                           cATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAaaaagaaa                                                  <  2:1303664/110‑1 (MQ=40)                                           cATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGt          >  2:2171736/1‑150 (MQ=38)                                           cATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGt          >  2:2171920/1‑150 (MQ=38)                                           cATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGATAGGGCCAGCCGCCTTTTGCTTTGt          >  2:2171539/1‑150 (MQ=38)                                            aTTGTTCCGGGTAGGAGATAACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAACCATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACACCTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCGAGCCGCCCTTTGCCTTGtt         >  2:1754547/1‑150 (MQ=11)                                              tGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAg       <  2:1186262/150‑1 (MQ=35)                                              tGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTCCTAAAAGAAAAGGCGGTTGGCCTGGTAGGGCCAGCCGCCTTTTGCTTTGTTAg       <  1:1357343/150‑1 (MQ=255)                                                ttCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCttt                  <  2:1151539/137‑1 (MQ=33)                                                ttCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCttt                  >  1:1151539/1‑137 (MQ=33)                                                ttCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAggg     >  1:1372398/1‑150 (MQ=33)                                                   cGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGCGGTGTACGGCTTCCGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGTTc  <  2:1303924/150‑1 (MQ=14)                                                                                                                                                      |                                                   GGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGTTC  >  NC_002947/1296431‑1296630

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.