| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1487013 = | 14 (0.150) | 24 (0.340) | 16/190 | NT | 63.5% | intergenic (+22/+108) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS |
| ? | NC_002947 | 1487103 = | 17 (0.240) | intergenic (+112/+18) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS | |||||
GCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGCTACCTG > NC_002947/1487024‑1487252 | GCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCt < 1:1409134‑M1/150‑1 (MQ=255) gcccgctcccacaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGc > 2:1711261‑M2/76‑150 (MQ=255) CCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCg < 1:128950‑M1/150‑1 (MQ=255) ccGCTCCCACAGGTTTAGCGCTGGCTTTAGAGCATACGTAGTTTCTTTGTGAGCGGGTGTGACCGCGAAGGGCAGCCAATAAATAATGAGCTGGTTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCAGACGCCCCACCTCGGCGa > 1:1752046/1‑150 (MQ=255) CCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCCTTTGAGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGa < 1:1614183‑M1/150‑1 (MQ=255) CCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGa < 2:1102983‑M1/150‑1 (MQ=255) tcccacaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTc < 2:963753‑M2/72‑1 (MQ=255) tcccacaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTc > 1:963753‑M2/70‑141 (MQ=255) ccacaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGc < 1:1631005‑M2/82‑1 (MQ=255) ccacaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGc > 2:1631005‑M2/68‑149 (MQ=255) CCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGc > 2:2404678‑M1/1‑78 (MQ=255) CCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGc < 1:2404678‑M1/78‑1 (MQ=255) cacaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCtt > 1:561110‑M2/67‑150 (MQ=255) acaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcTGCCGCGCCGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTc > 1:497720‑M2/66‑150 (MQ=255) acaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTAt > 2:20848‑M2/66‑87 (MQ=255) acaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTAt < 1:20848‑M2/22‑1 (MQ=255) acaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTc > 2:1023255‑M2/66‑150 (MQ=255) acaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTc > 2:1667814‑M2/66‑150 (MQ=255) acaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTc > 1:2268099‑M2/66‑150 (MQ=255) acaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTc > 1:2208199‑M2/66‑150 (MQ=255) acaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTc > 2:2073097‑M2/66‑150 (MQ=255) caggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCa > 2:1219204‑M2/65‑150 (MQ=255) caggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCGCGGCGATCAGCTTCa > 2:2254899‑M2/65‑150 (MQ=255) aggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCATCTTCaa > 2:1568935‑M2/64‑150 (MQ=255) aggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCATCTTCaa > 2:1568906‑M2/64‑150 (MQ=255) GGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAAc > 2:128950‑M1/1‑150 (MQ=255) gaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAAct < 1:1711261‑M2/89‑1 (MQ=255) tttAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAActg > 1:804391/1‑150 (MQ=255) ttacgcaggctccaaagccagcgtaattcctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAActgct > 2:1093620‑M2/59‑150 (MQ=255) ttacgcaggctccaaagccagcgtaattcctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAActgct < 1:1093620‑M2/92‑1 (MQ=255) tGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGt > 2:655557/1‑150 (MQ=255) ggCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGtt < 1:655557/150‑1 (MQ=255) gctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcTGCCGCGCAGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTg < 2:497720‑M2/100‑1 (MQ=255) tttGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCtt < 2:2057298/132‑1 (MQ=255) tttGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCtt > 1:2057298/1‑132 (MQ=255) tttGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTgcg > 2:667953/1‑150 (MQ=255) tttGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTgcg > 1:108555/1‑150 (MQ=255) tttGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTgcg > 2:499148/1‑150 (MQ=255) ggAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAActgct < 2:77128/137‑1 (MQ=255) ggAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAActgct > 1:77128/1‑137 (MQ=255) gCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGAt < 2:1201817/120‑1 (MQ=255) gCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGAt > 1:1201817/1‑120 (MQ=255) tGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTc > 2:1560617/1‑150 (MQ=255) agcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTc > 2:2285510‑M2/40‑150 (MQ=255) cgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGa < 1:1023255‑M2/113‑1 (MQ=255) gTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCctgg < 2:245411/70‑1 (MQ=255) gTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCctgg > 1:245411/1‑70 (MQ=255) gTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGAt < 2:1752046/150‑1 (MQ=255) aTTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATgg > 2:2316722/1‑149 (MQ=255) aTTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATgg < 1:2316722/149‑1 (MQ=255) tCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCTGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTa > 2:1211145/1‑150 (MQ=255) tCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTa > 1:2078628/1‑150 (MQ=255) gggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTAtcttct < 1:1102983‑M2/125‑1 (MQ=255) gggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCa < 2:484550‑M2/68‑1 (MQ=255) gggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCa > 1:484550‑M2/20‑87 (MQ=255) cgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCTATGGTTATCTTCTCGTTGGGCTTGATCcgc < 2:1409134‑M2/142‑1 (MQ=255) ccaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCcgc > 2:761126‑M2/9‑150 (MQ=255) cGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGCTACCTg < 1:1219204/150‑1 (MQ=255) | GCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGCTACCTG > NC_002947/1487024‑1487252 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |