| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4537562 = | NA (NA) | 13 (0.150) | 8/240 | NT | 32.6% | coding (853/1533 nt) | PP_4025 | transposase |
| ? | NC_002947 | = 4626671 | 28 (0.300) | coding (879/1533 nt) | PP_4091 | transposase | |||||
CTTGCCCTTAGGCTGCACCTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGAACAGCACGACTTGTCGATCAGGCGGGCCACTGGCCTGCACCCACATCCAGGATTGACTGGTCGGATCACGATCCGGCTCTTTGAGCACCTGCACGCGAGTTTCATC > NC_002947/4626524‑4626820 | cTTGCCCTTAGGCTGCACCTTCTGCGCTTCGACGAGTTTACGCCGAACATTCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCca‑‑‑gcag > 1:52077/1‑150 (MQ=17) ttGCCCTTAGCCGGCACCTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAgg < 1:1067235/150‑1 (MQ=17) ccTTAGGCTGCACCTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCa > 2:1427896/1‑150 (MQ=32) cTTAGGCTGCACCTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAg > 1:911862/1‑150 (MQ=32) cTTAGGCTGCACCTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAg > 1:375525/1‑150 (MQ=32) gCTGCACCTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGcc > 2:551866/1‑149 (MQ=17) cACCTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCAcctc < 2:315406/150‑1 (MQ=32) cccTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGACGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGGAATCATCGGTCATCACGTAACCGCGA‑TCGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCAcctcc < 2:1254533/149‑1 (MQ=12) ccTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCAcctcct < 2:184175/150‑1 (MQ=32) cTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCcgcgcgcaggaggtgccgct < 1:824553‑M2/150‑21 (MQ=255) cTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCACCTCCTg > 2:1540789/1‑150 (MQ=32) cTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCACCTCCTg > 1:2363545/1‑150 (MQ=32) gcgcTTCGACGAATTTACGCAGAACATGCGACATGCACGCGAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCACCTCCTgcgcgc > 2:1075614/1‑150 (MQ=12) cTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGc > 2:265461/1‑150 (MQ=32) ttCGACGAATTTACGCCGGACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCACCAGCcgcgcgcaggaggtgccgctgcgcct < 1:2344617‑M2/150‑27 (MQ=255) tCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCtg < 2:317549/150‑1 (MQ=32) tCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCtg < 1:1540789/150‑1 (MQ=32) gacgaATTTACGCCGGACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCACCAGCcgcgcgcaggaggtgccgctgcgcctgct > 2:2344617‑M2/1‑121 (MQ=255) gacgaATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCtggt < 1:267497/150‑1 (MQ=32) gacgaATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCtggt > 1:1301888/1‑150 (MQ=32) gacgaATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCACTATCGCCAACGCGTTGTAACCGGCGTAATCCTCGGTAGAGACG‑AGGAATGATTAGCCC‑‑‑TCCA‑‑‑GCAGTCGCAGCGGCCCCTCCTGCGCCCGGCtggt > 2:63467/1‑150 (MQ=2) acgaATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCcgcgcgcaggaggtgccgctgcgcctgctggag > 2:824553‑M2/1‑117 (MQ=255) acgaATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCtggtg < 2:1417484/150‑1 (MQ=32) gaATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCTggtggt < 1:198569/150‑1 (MQ=32) aaTTTACGCCGGACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCCACCACCA‑‑‑GCcgcgcgcaggaggtgccgctgcgcctgctggag > 2:2209223‑M2/1‑117 (MQ=255) aaTTTACGCCGGACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCACCAGCcgcgcgcaggaggtgccgctgcgcctgctggag > 2:2349257‑M2/1‑117 (MQ=255) aaTTTACGCCGGACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCACCAGCcgcgcgcaggaggtgccgctgcgcctgctggag > 1:1653735‑M2/1‑117 (MQ=255) tttACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCAc > 2:1186090/1‑126 (MQ=33) tttACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCAc < 1:1186090/126‑1 (MQ=33) tACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCTTGTCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAAt < 1:1841546/150‑1 (MQ=12) tACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAAt < 1:1580989/150‑1 (MQ=32) gCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGa > 2:2152273/1‑150 (MQ=32) ccGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCTggtggt < 2:615643/141‑1 (MQ=32) ccGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCTggtggt > 1:615643/1‑141 (MQ=32) ccGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGaa < 1:685097/150‑1 (MQ=32) cGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGAAc < 1:1427896/150‑1 (MQ=32) gAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCcgcgcgcaggaggtgccgctgcgcctgctgga < 2:579116‑M2/136‑33 (MQ=255) gAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCcgcgcgcaggaggtgccgctgcgcctgctgga > 1:579116‑M2/1‑104 (MQ=255) gAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGAACa > 2:443232/1‑150 (MQ=31) tGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCaggcgcaggaggtgccgctgcgcctgctggagggctatc > 2:2259603‑M2/1‑99 (MQ=255) tGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCaggcgcaggaggtgccgctgcgcctgctggagggctatc > 2:2259720‑M2/1‑99 (MQ=255) tGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCaggcgcaggaggtgccgctgcgcctgctggagggctatc < 1:2259603‑M2/138‑40 (MQ=255) tGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCaggcgcaggaggtgccgctgcgcctgctggagggctatc < 1:2259720‑M2/138‑40 (MQ=255) ccA‑‑‑GCcgcgcgcaggaggtgccgctgcgcctgctggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcg < 2:1361124‑M2/150‑146 (MQ=255) cA‑‑‑GCcgcgcgcaggaggtgccgctgcgcctgctggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcga < 1:1689728‑M2/150‑147 (MQ=255) cA‑‑‑GCcgcgcgcaggaggtgccgctgcgcctgctggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgcgacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcga < 1:1594510‑M2/150‑147 (MQ=255) a‑‑‑GCcgcgcgcaggaggtgccgctgcgcctgctggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcgttccgcatgtccggcgtaaattcgtcgaa > 1:664489‑M2/1‑3 (MQ=255) a‑‑‑GCcgcgcgcaggaggtgccgctgcgcctgctggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaa > 2:55302‑M2/1‑3 (MQ=255) a‑‑‑GCcgcgcgcaggaggtgccgctgcgcctgctggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaa < 2:580572‑M2/150‑148 (MQ=255) a‑‑‑GCcgcgcgcaggaggtgccgctgcgcctgctggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaa > 1:2193724‑M2/1‑3 (MQ=255) gCcgcgcgcaggaggtgccgctgcgcctgctggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaag < 2:2412122‑M2/150‑149 (MQ=255) ccgcgcgcaggaggtgccgctgcgcctgctggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagc < 2:1933691‑M2/150‑150 (MQ=255) | CTTGCCCTTAGGCTGCACCTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGA‑TAGCCC‑‑‑TCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGAACAGCACGACTTGTCGATCAGGCGGGCCACTGGCCTGCACCCACATCCAGGATTGACTGGTCGGATCACGATCCGGCTCTTTGAGCACCTGCACGCGAGTTTCATC > NC_002947/4626524‑4626820 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |