New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4886181 = | 24 (0.260) | 8 (0.110) | 8/192 | NT | 32.4% | intergenic (+15/+108) | PP_4295/PP_4296 | TetR family transcriptional regulator/hypothetical protein |
? | NC_002947 | 4886268 = | 15 (0.210) | intergenic (+102/+21) | PP_4295/PP_4296 | TetR family transcriptional regulator/hypothetical protein |
TTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCACCCAGCACCTTGCCGTC > NC_002947/4886145‑4886408 | ttGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGc < 1:74583/150‑1 (MQ=255) ccTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTAcc > 1:1759546/1‑150 (MQ=255) GCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATc > 1:1901150‑M1/1‑148 (MQ=255) GCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATc < 2:1901150‑M1/148‑1 (MQ=255) AAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCGCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGACCTGAt < 2:1485337‑M1/150‑1 (MQ=255) AAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGccc > 1:2049653‑M1/1‑122 (MQ=255) AAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGccc < 2:2049653‑M1/122‑1 (MQ=255) ccgctcccacagggactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGca > 2:5562‑M2/72‑150 (MQ=255) CCGGTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGCTCgcc < 2:353351‑M1/150‑2 (MQ=255) CCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGca < 2:1812005‑M1/150‑1 (MQ=255) cgctcccacagggactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAgg > 1:1148537‑M2/71‑81 (MQ=255) cgctcccacagggactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAgg < 2:1148537‑M2/11‑1 (MQ=255) CGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGAt < 2:779056‑M1/145‑1 (MQ=255) CGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGAt > 1:779056‑M1/1‑145 (MQ=255) CCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGc > 1:218687‑M1/1‑68 (MQ=255) CCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGc < 2:218687‑M1/68‑1 (MQ=255) ccacagggactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGc > 2:979199‑M2/66‑150 (MQ=255) ccacagggactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGc < 1:5562‑M2/85‑1 (MQ=255) CACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCa < 1:1385443‑M1/104‑1 (MQ=255) CACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCa > 2:1385443‑M1/1‑104 (MQ=255) CACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCGCTGATCGCACACTGCt < 2:1911389‑M1/150‑1 (MQ=255) ACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCCACAGAGATTTAGGCCGCTGCCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCtc > 1:886563‑M1/1‑150 (MQ=255) ACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCGCTGATCGCACACTGCtc > 1:1911389‑M1/1‑150 (MQ=255) accacATGCCTGCAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGatat > 2:1594537/1‑150 (MQ=255) ccacATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCGGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATc > 1:361049/1‑150 (MQ=255) cacaTGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATcc > 2:143659/1‑150 (MQ=255) caTGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCa < 2:2245370/121‑1 (MQ=255) caTGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCa > 1:2245370/1‑121 (MQ=255) aaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGa < 1:2369563‑M2/99‑1 (MQ=255) aaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGa > 2:2369563‑M2/51‑149 (MQ=255) cTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTAt > 1:558344/1‑150 (MQ=255) tGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATc < 2:558344/150‑1 (MQ=255) gTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATc < 2:2308324/107‑1 (MQ=255) gTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATc > 1:2308324/1‑107 (MQ=255) gTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATcgccgc > 1:255702/1‑150 (MQ=255) gTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATcgccgc < 2:1759546/150‑1 (MQ=255) ttGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCt > 2:104462/1‑150 (MQ=255) atgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCt < 1:979199‑M2/111‑1 (MQ=255) ggAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATc > 1:338737/1‑150 (MQ=255) aGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATccc > 2:1619702/1‑150 (MQ=255) gtttctgtggtagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCCCTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATcccc > 2:822795‑M2/33‑150 (MQ=255) cctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACg > 1:353844‑M2/30‑150 (MQ=255) cctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGACGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACg > 2:1288289‑M2/30‑150 (MQ=255) ctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATcgccg < 1:497870‑M2/109‑1 (MQ=255) ctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATcgccg > 2:497870‑M2/29‑137 (MQ=255) tgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCAc > 1:1607043‑M2/26‑150 (MQ=255) ttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCACCCAGCACCTTg > 2:1887432‑M2/15‑150 (MQ=255) ttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCACCCAGCACCTTg > 2:1546159‑M2/15‑150 (MQ=255) ccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCtcgt < 1:567301‑M2/89‑1 (MQ=255) ccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCtcgt > 2:567301‑M2/11‑99 (MQ=255) ccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATcgccgc > 2:2424789‑M2/11‑120 (MQ=255) ccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATcgccgc < 1:2424789‑M2/110‑1 (MQ=255) ccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCACCCAGCACCTTGCCGt > 1:1146789‑M2/11‑150 (MQ=255) ccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCACCCAGCACCTTGCCGt > 2:1937467‑M2/11‑150 (MQ=255) cgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCACCCAGCACCTTGCCGTc < 1:1619702‑M2/141‑1 (MQ=255) ccgcgaatgGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGGATCTGCCCGCAGCCCCACCTCGTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCACCCAGCACCTTGCCGTc > 2:1228935‑M2/10‑150 (MQ=255) | TTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCACCCAGCACCTTGCCGTC > NC_002947/4886145‑4886408 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |