New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 4886181 =24 (0.260)8 (0.110) 8/192 NT 32.4% intergenic (+15/+108) PP_4295/PP_4296 TetR family transcriptional regulator/hypothetical protein
?NC_002947 4886268 = 15 (0.210)intergenic (+102/+21) PP_4295/PP_4296 TetR family transcriptional regulator/hypothetical protein

TTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCACCCAGCACCTTGCCGTC  >  NC_002947/4886145‑4886408
                                                                                                                           |                                                                                                                                            
ttGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGc                                                                                                                    <  1:74583/150‑1 (MQ=255)
       ccTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTAcc                                                                                                             >  1:1759546/1‑150 (MQ=255)
                                          GCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATc                                                                            >  1:1901150‑M1/1‑148 (MQ=255)
                                          GCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATc                                                                            <  2:1901150‑M1/148‑1 (MQ=255)
                                                AAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCGCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGACCTGAt                                                                    <  2:1485337‑M1/150‑1 (MQ=255)
                                                AAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGccc                                                                                                >  1:2049653‑M1/1‑122 (MQ=255)
                                                AAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGccc                                                                                                <  2:2049653‑M1/122‑1 (MQ=255)
                                                    ccgctcccacagggactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGca                                                                >  2:5562‑M2/72‑150 (MQ=255)
                                                    CCGGTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGCTCgcc                                                                <  2:353351‑M1/150‑2 (MQ=255)
                                                    CCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGca                                                                <  2:1812005‑M1/150‑1 (MQ=255)
                                                     cgctcccacagggactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAgg                                                                                                                                    >  1:1148537‑M2/71‑81 (MQ=255)
                                                     cgctcccacagggactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAgg                                                                                                                                    <  2:1148537‑M2/11‑1 (MQ=255)
                                                     CGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGAt                                                                    <  2:779056‑M1/145‑1 (MQ=255)
                                                     CGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGAt                                                                    >  1:779056‑M1/1‑145 (MQ=255)
                                                         CCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGc                                                                                                                                             >  1:218687‑M1/1‑68 (MQ=255)
                                                         CCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGc                                                                                                                                             <  2:218687‑M1/68‑1 (MQ=255)
                                                          ccacagggactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGc                                                          >  2:979199‑M2/66‑150 (MQ=255)
                                                          ccacagggactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGc                                                          <  1:5562‑M2/85‑1 (MQ=255)
                                                           CACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCa                                                                                                       <  1:1385443‑M1/104‑1 (MQ=255)
                                                           CACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCa                                                                                                       >  2:1385443‑M1/1‑104 (MQ=255)
                                                           CACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCGCTGATCGCACACTGCt                                                         <  2:1911389‑M1/150‑1 (MQ=255)
                                                            ACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCCACAGAGATTTAGGCCGCTGCCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCtc                                                        >  1:886563‑M1/1‑150 (MQ=255)
                                                            ACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCGCTGATCGCACACTGCtc                                                        >  1:1911389‑M1/1‑150 (MQ=255)
                                                                    accacATGCCTGCAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGatat                                                >  2:1594537/1‑150 (MQ=255)
                                                                     ccacATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCGGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATc                                               >  1:361049/1‑150 (MQ=255)
                                                                      cacaTGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATcc                                              >  2:143659/1‑150 (MQ=255)
                                                                        caTGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCa                                                                         <  2:2245370/121‑1 (MQ=255)
                                                                        caTGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCa                                                                         >  1:2245370/1‑121 (MQ=255)
                                                                         aaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGa                                            <  1:2369563‑M2/99‑1 (MQ=255)
                                                                         aaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGa                                            >  2:2369563‑M2/51‑149 (MQ=255)
                                                                             cTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTAt                                       >  1:558344/1‑150 (MQ=255)
                                                                              tGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATc                                      <  2:558344/150‑1 (MQ=255)
                                                                                   gTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATc                                                                            <  2:2308324/107‑1 (MQ=255)
                                                                                   gTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATc                                                                            >  1:2308324/1‑107 (MQ=255)
                                                                                   gTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATcgccgc                                 >  1:255702/1‑150 (MQ=255)
                                                                                   gTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATcgccgc                                 <  2:1759546/150‑1 (MQ=255)
                                                                                    ttGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCt                                >  2:104462/1‑150 (MQ=255)
                                                                                    atgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCt                                <  1:979199‑M2/111‑1 (MQ=255)
                                                                                        ggAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATc                            >  1:338737/1‑150 (MQ=255)
                                                                                          aGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATccc                          >  2:1619702/1‑150 (MQ=255)
                                                                                           gtttctgtggtagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCCCTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATcccc                         >  2:822795‑M2/33‑150 (MQ=255)
                                                                                              cctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACg                      >  1:353844‑M2/30‑150 (MQ=255)
                                                                                              cctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGACGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACg                      >  2:1288289‑M2/30‑150 (MQ=255)
                                                                                               ctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATcgccg                                  <  1:497870‑M2/109‑1 (MQ=255)
                                                                                               ctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATcgccg                                  >  2:497870‑M2/29‑137 (MQ=255)
                                                                                                  tgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCAc                  >  1:1607043‑M2/26‑150 (MQ=255)
                                                                                                             ttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCACCCAGCACCTTg       >  2:1887432‑M2/15‑150 (MQ=255)
                                                                                                             ttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCACCCAGCACCTTg       >  2:1546159‑M2/15‑150 (MQ=255)
                                                                                                                 ccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCtcgt                                                      <  1:567301‑M2/89‑1 (MQ=255)
                                                                                                                 ccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCtcgt                                                      >  2:567301‑M2/11‑99 (MQ=255)
                                                                                                                 ccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATcgccgc                                 >  2:2424789‑M2/11‑120 (MQ=255)
                                                                                                                 ccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATcgccgc                                 <  1:2424789‑M2/110‑1 (MQ=255)
                                                                                                                 ccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCACCCAGCACCTTGCCGt   >  1:1146789‑M2/11‑150 (MQ=255)
                                                                                                                 ccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCACCCAGCACCTTGCCGt   >  2:1937467‑M2/11‑150 (MQ=255)
                                                                                                                  cgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCACCCAGCACCTTGCCGTc  <  1:1619702‑M2/141‑1 (MQ=255)
                                                                                                                  ccgcgaatgGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGGATCTGCCCGCAGCCCCACCTCGTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCACCCAGCACCTTGCCGTc  >  2:1228935‑M2/10‑150 (MQ=255)
                                                                                                                           |                                                                                                                                            
TTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCACCCAGCACCTTGCCGTC  >  NC_002947/4886145‑4886408

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.