Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,667,705 T→C 7.2% D342G (GAT→GGT)  PP_3231 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,667,7050TC 7.2% 277.2 / 8.1 97D342G (GAT→GGT) PP_3231hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (45/45);  new base C (2/5);  total (47/50)
Fisher's exact test for biased strand distribution p-value = 4.37e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.26e-01

GTGGACAACACATGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGAGTTGTGAGC  >  NC_002947/3667558‑3667853
                                                                                                                                                    |                                                                                                                                                    
gTGGACAACACATGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATcg                                                                                                                                                    >  1:1508419/1‑150 (MQ=255)
  ggACAACACATGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATnggc                                                                                                                                                  <  2:1497415/150‑1 (MQ=255)
   gACAACACATGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATcggcg                                                                                                                                                 <  1:1597126/150‑1 (MQ=255)
        cacaTGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCggcggcggc                                                                                                                                            >  2:830152/1‑150 (MQ=255)
         acaTGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGCCACCGACCGCGGcc                                                                                                                                           >  2:1928595/1‑150 (MQ=255)
          caTGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCa                                                                                                                                          >  1:1542169/1‑150 (MQ=255)
           aTGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCAc                                                                                                                                         >  2:2449280/1‑150 (MQ=255)
            tGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCAcc                                                                                                                                        >  1:1813436/1‑150 (MQ=255)
              gcgcAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTg                                                                                                                                      >  1:669979/1‑150 (MQ=255)
              gcgcAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTg                                                                                                                                      <  1:1089946/150‑1 (MQ=255)
               cgcAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTgg                                                                                                                                     <  1:445904/150‑1 (MQ=255)
                     tCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGTGGCCACCTGGCCGcgg                                                                                                                               >  1:466596/1‑150 (MQ=255)
                      ccTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGCCACCGACCGCGGCCAGGTGGCcgccgc                                                                                                                              <  1:1929940/150‑4 (MQ=255)
                      ccTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGCCACCGACCGCGGCCAGGTGGCcgccgc                                                                                                                              <  1:1928595/150‑4 (MQ=255)
                       cTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCACCGACCGCGGCCAGGTGGCcgccgcc                                                                                                                             >  1:1735207/1‑146 (MQ=255)
                        ttGCGCTGTTGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGcggtcg                                                                                                                            <  1:100683/150‑1 (MQ=255)
                        ttGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGTCTGGCACGCCTGCGAGGCGGAACTGATCCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGcggtcg                                                                                                                            <  1:1106447/150‑1 (MQ=255)
                        ttGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGTCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACGTGGCCGcggtcg                                                                                                                            >  2:1330789/1‑150 (MQ=255)
                        ttGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGcggtcg                                                                                                                            >  2:1756849/1‑150 (MQ=255)
                          gcgcTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACTCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCACCGACCGCGGCCAGGTGGCcgccgccgat                                                                                                                          <  1:1196960/150‑8 (MQ=255)
                          gcgcTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCACCGACCGCGGCCAGGTGGCcgccgccgat                                                                                                                          <  2:1735207/150‑8 (MQ=255)
                           cgcTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTg                                                                                                                         <  1:531067/150‑1 (MQ=255)
                            gcTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCACCGGCGGCGGCCACCTGGCCGCGGTCGGTgg                                                                                                                        <  2:1410501/150‑1 (MQ=255)
                               gtgGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCa                                                                                                                     <  2:1468111/150‑1 (MQ=255)
                                tgGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCAt                                                                                                                    <  2:1813436/150‑1 (MQ=255)
                                  ggTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGc                                                                                                                  <  2:535122/150‑1 (MQ=255)
                                     cgcgCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGa                                                                                                               <  1:1069832/150‑1 (MQ=255)
                                       cgcCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATc                                                                                                             >  2:490332/1‑150 (MQ=255)
                                        gcCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATc                                                                                                             >  2:2073863/1‑149 (MQ=255)
                                        gcCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATc                                                                                                             <  1:2073863/149‑1 (MQ=255)
                                         ccAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCaa                                                                                                           <  1:1442710/150‑1 (MQ=255)
                                          cAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAac                                                                                                          >  2:2265817/1‑150 (MQ=255)
                                            gTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAacac                                                                                                        >  2:1784900/1‑150 (MQ=255)
                                               gCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACcgc                                                                                                     >  1:457057/1‑150 (MQ=255)
                                                cTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACGGATGCTCCCAGCTGACGCGGCGCGAA‑GGTCGGATTACCTTGATCGACATGTCTACGCCCCAGGAATCGCCGGCCGCCACCTGGCCGCGGTCGGTGGCCGTGCCCATCACCACggcg                                                                                                    >  2:1148037/1‑150 (MQ=255)
                                                       aggcTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGcggtcggt                                                                                                                          >  2:2189734/1‑121 (MQ=255)
                                                       aggcTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGcggtcggt                                                                                                                          <  1:2189734/121‑1 (MQ=255)
                                                       aggcTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGcc                                                                                             <  1:467473/150‑1 (MQ=255)
                                                               aCGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAgcg                                                                                     >  1:1210197/1‑150 (MQ=255)
                                                               aCGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAgcg                                                                                     >  2:1893050/1‑150 (MQ=255)
                                                                cGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGGA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAgcgc                                                                                    >  2:1046545/1‑150 (MQ=255)
                                                                   cTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGTGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGc                                                                                 <  2:466596/150‑1 (MQ=255)
                                                                    tGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCg                                                                                <  1:1893050/150‑1 (MQ=255)
                                                                     gCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAACCCTCGGA‑TTACATGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCgg                                                                               >  1:2254613/1‑150 (MQ=255)
                                                                     gCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCACCACCGCGTCGTGCCCGAAAGCGCTGCgg                                                                               <  1:2156282/150‑1 (MQ=255)
                                                                     gCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGAGAC‑GGTCGGTTTTGTCTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCgg                                                                               >  1:2254669/1‑150 (MQ=255)
                                                                       gAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTg                                                                                                                         >  2:1070622/1‑106 (MQ=255)
                                                                       gAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTg                                                                                                                         <  1:1070622/106‑1 (MQ=255)
                                                                          gCGGAACTGATGCTCCCAGCTGTCGCTGCTCAAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAg                                                                          >  1:2275704/1‑150 (MQ=255)
                                                                               aCTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGc                                                                     <  2:1440227/150‑1 (MQ=255)
                                                                               aCTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTGGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGc                                                                     <  2:993760/150‑1 (MQ=255)
                                                                                 tGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCg                                                                   >  2:2300990/1‑150 (MQ=255)
                                                                                   aTGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGAt                                                                 >  2:1646811/1‑150 (MQ=255)
                                                                                    tGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATATCGCGTTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATg                                                                <  2:2275704/150‑1 (MQ=255)
                                                                                      cTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGtt                                                              >  2:1775045/1‑150 (MQ=255)
                                                                                      cTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGtt                                                              <  1:2300990/150‑1 (MQ=255)
                                                                                         ccAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAgcgc                                                                                    <  1:423621/125‑1 (MQ=255)
                                                                                         ccAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAgcgc                                                                                    >  2:423621/1‑125 (MQ=255)
                                                                                         ccAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGc                                                                         <  1:1189049/136‑1 (MQ=255)
                                                                                         ccAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGaa                                                           <  2:289744/150‑1 (MQ=255)
                                                                                         ccAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGCGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGc                                                                         >  2:1189049/1‑136 (MQ=255)
                                                                                            gCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTg                                                        <  1:490332/150‑1 (MQ=255)
                                                                                            gCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTg                                                        <  2:1590884/150‑1 (MQ=255)
                                                                                             cTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTgg                                                       <  1:1046545/150‑1 (MQ=255)
                                                                                                  gCTGCGCGAA‑GGTCGGATATCCTTGATGTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCttt                                                  >  1:1147178/1‑150 (MQ=255)
                                                                                                   cTGCGCGAA‑GGTCGGATTTCCATGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCAGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAGGCTGGCCGATGTTGAACTGGCCTTTc                                                 <  2:1210197/150‑1 (MQ=255)
                                                                                                       gcgAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGc                                             <  1:1784900/150‑1 (MQ=255)
                                                                                                           a‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCAt                                         >  1:1810489/1‑150 (MQ=255)
                                                                                                              gTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGc                                                                                 >  1:1302235/1‑108 (MQ=255)
                                                                                                              gTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGc                                                                                 <  2:1302235/108‑1 (MQ=255)
                                                                                                               tCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGtt                                                              <  1:2197124/126‑1 (MQ=255)
                                                                                                               tCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGtt                                                              >  2:2197124/1‑126 (MQ=255)
                                                                                                               tCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTg                                                        >  2:1386351/1‑132 (MQ=255)
                                                                                                               tCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTg                                                        <  1:1386351/132‑1 (MQ=255)
                                                                                                               tCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCACGAGTCTCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTc                                      >  1:885531/1‑150 (MQ=255)
                                                                                                                cGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGACGATGTTGAACTGGCCTTTCCAGCCCATTTcc                                     <  2:1341412/150‑1 (MQ=255)
                                                                                                                    tttCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAACGCGCTGCCGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTgg                                 >  1:146372/1‑150 (MQ=255)
                                                                                                                        cTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGc                             >  1:1736627/1‑150 (MQ=255)
                                                                                                                        cTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGc                             >  1:1220679/1‑150 (MQ=255)
                                                                                                                         ttGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCa                                               <  2:2009563/131‑1 (MQ=255)
                                                                                                                         ttGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCa                                               >  1:2009563/1‑131 (MQ=255)
                                                                                                                         ttGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCAGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCg                            >  1:1634880/1‑150 (MQ=255)
                                                                                                                              cTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCAtt                       >  2:640149/1‑150 (MQ=255)
                                                                                                                                 cATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGcc                    <  1:1274152/150‑1 (MQ=255)
                                                                                                                                 cATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCGGCGGCATTGcc                    <  1:2265817/150‑1 (MQ=255)
                                                                                                                                       gCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATg              <  1:1756849/150‑1 (MQ=255)
                                                                                                                                       gCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATg              <  1:2100233/150‑1 (MQ=255)
                                                                                                                                           tCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGAg          >  2:1557317/1‑150 (MQ=255)
                                                                                                                                            cccAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGAGt         >  2:2397945/1‑150 (MQ=255)
                                                                                                                                             ccAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTgg                                                                      >  1:910762/1‑88 (MQ=255)
                                                                                                                                             ccAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTgg                                                                      <  2:910762/88‑1 (MQ=255)
                                                                                                                                             ccAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGc                                                                     >  1:1830491/1‑89 (MQ=255)
                                                                                                                                             ccAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGc                                                                     <  2:1830491/89‑1 (MQ=255)
                                                                                                                                             ccAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGNGtt        <  2:1508419/150‑1 (MQ=255)
                                                                                                                                             ccAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGAGtt        <  2:582848/150‑1 (MQ=255)
                                                                                                                                                 tCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGAGTTGTGa    <  1:1775045/150‑1 (MQ=255)
                                                                                                                                                   aTCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGAGTTGTGAGc  >  1:849623/1‑150 (MQ=255)
                                                                                                                                                    tCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCg                            <  1:130515/123‑1 (MQ=255)
                                                                                                                                                    tCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCg                            >  2:130515/1‑123 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
GTGGACAACACATGGCGCAGCTCCTTGCGCTGTGGGTCGCGCCAGTCGCTCAGGCAGGCTGGCACGCCTGCGAGGCGGAACTGATGCTCCCAGCTGTCGCTGCGCGAA‑GGTCGGATTTCCTTGATCTGCATGTCGCCGTCCCAGTCATCGGCGGCGGCCACCTGGCCGCGGTCGGTGGCCATGCCGATCAACACCGCGTCGTGCCCGAAAGCGCTGCGGCAAAGCTGGCCGATGTTGAACTGGCCTTTCCAGCCCATTTCCGTGGCTGCGGCATTGCCGATATGGGAGTTGTGAGC  >  NC_002947/3667558‑3667853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑