| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,853,809 | C→T | 8.1% | intergenic (+48/+34) | PP_3401 → / ← PP_3402 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,853,809 | 0 | C | T | 8.1% | 350.2 / 15.7 | 123 | intergenic (+48/+34) | PP_3401/PP_3402 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (50/63); new base T (5/5); total (55/68) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.51e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.12e-01 | |||||||||||
Only 100 of 123 total aligned reads displayed.
TGTGGCCTTCGTCTGGGATGGGCGGAGTTATCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGG > NC_002947/3853662‑3853957 | ccTTCGTCTGGGATGGGCGGAGTTATCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTg < 1:1778165/150‑1 (MQ=255) tCTGGGATGGGCGGAGTTATCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTTGTGGAA‑CTGCAATCAGAAGAACAGTTTGCAG‑GGGGGCCACGCGCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGa > 1:535199/1‑150 (MQ=255) tCTGGGATGGGCGGAGTTATCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGa > 2:1482054/1‑150 (MQ=255) tCTGGGATGGGCGGAGTTATCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGa > 1:1190308/1‑150 (MQ=255) gggATGGGCGGAGTTATCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGTCAGCCCAGGCTGGCCg < 1:1914227/150‑1 (MQ=255) ggATGGGCGGAGTTATCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGTCAGCCCAGGCTGGCCgg < 2:171140/150‑1 (MQ=255) ggATGGGCGGAGTTATCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCgg < 2:15358/150‑1 (MQ=255) gATGGGCGGAGTTATCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCggg < 1:1033268/150‑1 (MQ=255) aTGGGCGGAGTTATCACGGCGTGGTTCGCGAGAAGGGGAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGTCAGCCCAGGCTGGCCgg > 2:925179/1‑148 (MQ=255) aTGGGCGGAGTTATCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCgggg < 1:1952128/150‑1 (MQ=255) ttATCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGgc < 2:1992450/150‑1 (MQ=255) ttATCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGgc < 1:2085463/150‑1 (MQ=255) ttATCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGACTG‑GCCTACCGCCATAACCATTATTAACCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGgc < 1:2112750/150‑1 (MQ=255) tCACGGCGTGGTTCGCGCGAAGGGAAAGGGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGgcgcg > 1:1146478/1‑150 (MQ=255) tCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGgcgcg > 2:950099/1‑150 (MQ=255) ggCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCa < 1:86679/150‑1 (MQ=255) ggCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCa < 2:1986692/150‑1 (MQ=255) gCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAg < 1:1936727/150‑1 (MQ=255) gTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAAt < 1:689701/150‑1 (MQ=255) cgcgAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGc < 2:2008307/150‑1 (MQ=255) cgcgAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGc < 1:1053880/150‑1 (MQ=255) cgcgAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGc > 2:912016/1‑150 (MQ=255) gcgAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGcc > 2:533178/1‑150 (MQ=255) gcgAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGcc > 1:1865405/1‑150 (MQ=255) gagaAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCtt > 1:2437638/1‑150 (MQ=255) agaAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTg > 1:115723/1‑150 (MQ=255) gggAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTggg < 1:1713761/106‑1 (MQ=255) gggAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTggg > 2:1713761/1‑106 (MQ=255) gggAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCACTCGCCTTGAGTg > 2:1316154/1‑150 (MQ=255) gggAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTg < 1:1202652/150‑1 (MQ=255) gAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGgc < 2:1354516/150‑1 (MQ=255) tGCGGCGACGCTGGCCTGATCCTGCTGCTGGAA‑CTGCAATCAGCCGATCAG‑CGGAGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGAGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCgg < 1:925938/150‑1 (MQ=255) gcgACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTgg < 2:1865405/150‑1 (MQ=255) gACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATACGCCCATCAG‑CGTCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCt < 1:1344923/150‑1 (MQ=255) aCGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTa < 1:153905/150‑1 (MQ=255) gTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAATCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCa < 1:805477/150‑1 (MQ=255) gCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCacgc > 1:977453/1‑150 (MQ=255) cTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCacgcaa > 2:1627751/1‑150 (MQ=255) ggAACCTCCTGCTGGAC‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGCGCTCCACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCacgcaac < 2:1633286/149‑1 (MQ=255) ccTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCAt < 1:912016/150‑1 (MQ=255) ccTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCAt > 1:1035682/1‑150 (MQ=255) ctgctgctgGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATg < 1:2445331/150‑1 (MQ=255) tgctgctgGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGc > 1:170796/1‑150 (MQ=255) ctgctgGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAg < 2:1146478/150‑1 (MQ=255) tGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCCGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGTCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTccacc > 2:268465/1‑150 (MQ=255) tGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTccacc > 1:1662382/1‑150 (MQ=255) cAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAg > 1:1235590/1‑150 (MQ=255) aaTAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAgg < 2:1235590/150‑1 (MQ=255) aTAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGt < 2:572877/150‑1 (MQ=255) aTAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGt > 1:572877/1‑150 (MQ=255) gCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGAc < 2:1616423/150‑1 (MQ=255) gCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGAc < 1:1515425/150‑1 (MQ=255) cGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCa > 2:1827784/1‑150 (MQ=255) gATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTg < 1:2214503/52‑1 (MQ=255) gATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTg < 1:2214840/52‑1 (MQ=255) gATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTg > 2:2214503/1‑52 (MQ=255) gATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTg > 2:2214840/1‑52 (MQ=255) gATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAg > 1:171667/1‑150 (MQ=255) aG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCa < 1:2426242/150‑1 (MQ=255) g‑cggcgGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAg < 2:968268/67‑1 (MQ=255) g‑cggcgGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAg > 1:968268/1‑67 (MQ=255) g‑cggcgGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCAc < 1:1627751/150‑1 (MQ=255) ggcggcCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGa < 2:1662382/150‑1 (MQ=255) ggcggcCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGa < 1:950099/150‑1 (MQ=255) ccGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACt > 2:2227531/1‑150 (MQ=255) cGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTg < 1:1711406/150‑1 (MQ=255) tGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGtt < 2:115723/150‑1 (MQ=255) gCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGa < 2:300239/150‑1 (MQ=255) cACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTTAGTCGCGATGGGTGGCTGCTAGCGATCGCTTTCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGGTGAgg > 1:1475313/1‑150 (MQ=255) aCGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGt > 2:741179/1‑150 (MQ=255) gCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAgg > 1:1400855/1‑120 (MQ=255) gCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAgg > 1:1394572/1‑120 (MQ=255) gCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAgg > 1:1400761/1‑120 (MQ=255) gCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAgg < 2:1400761/120‑1 (MQ=255) gCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAgg < 2:1394572/120‑1 (MQ=255) gCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCt < 1:2276647/150‑1 (MQ=255) cTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCtt > 2:1405809/1‑150 (MQ=255) cGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGc < 1:209749/150‑1 (MQ=255) ctgctTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAgcgc > 1:1388002/1‑150 (MQ=255) ctTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGAc > 1:396731/1‑150 (MQ=255) tataCCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGAccc > 1:2240438/1‑150 (MQ=255) aCCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATc > 1:1051075/1‑50 (MQ=255) aCCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATc < 2:1051075/50‑1 (MQ=255) aCCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACaa < 1:381448/122‑1 (MQ=255) aCCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACaa > 2:381448/1‑122 (MQ=255) cccGGTCAGCCCAGGCTGGCCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAgctgc < 1:2037636/94‑1 (MQ=38) cccGGTCAGCCCAGGCTGGCCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAgctgc > 2:2037636/1‑94 (MQ=38) cccGGTCAGCCCAGGCTGGCCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGa < 1:2420855/128‑1 (MQ=255) cccGGTCAGCCCAGGCTGGCCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGa > 2:2420855/1‑128 (MQ=255) cccGGTCAGCCCAGGCTGGCCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGtt > 2:647320/1‑150 (MQ=255) cccGGTCAGCCCAGGCTGGCCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGtt > 2:1821854/1‑150 (MQ=255) ccGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTccacca < 1:2277462/100‑1 (MQ=255) ccGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTccacca > 2:2277462/1‑100 (MQ=255) ccGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGt < 2:1496555/112‑1 (MQ=255) ccGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGt > 1:1496555/1‑112 (MQ=255) cGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGa < 1:1701281/150‑1 (MQ=255) ggCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTTGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAg < 1:751048/150‑1 (MQ=255) ggCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAg < 2:2437638/150‑1 (MQ=255) ggCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAg < 1:1784477/150‑1 (MQ=255) gCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACCACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAgg > 2:1163761/1‑150 (MQ=255) | TGTGGCCTTCGTCTGGGATGGGCGGAGTTATCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAA‑CTGCAATAAGCCGATCAG‑CGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGG > NC_002947/3853662‑3853957 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |