| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,999,748 | A→C | 5.0% | E130A (GAG→GCG) | PP_3528 → | ABC transporter substrate‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,999,748 | 0 | A | C | 5.0% | 264.0 / 6.1 | 101 | E130A (GAG→GCG) | PP_3528 | ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base A (50/45); new base C (3/2); total (54/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.86e-01 | |||||||||||
Only 100 of 106 total aligned reads displayed.
CCAGCTACTGGAGGCATTGAGCACCGGCGCCATCGACCTCGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAGTTACAAGGACATTACCCCCGCATACGTCAACAATGCC > NC_002947/3999599‑3999896 | ccAGCTACTGGAGGCATTGAGCACCGGCGCCATCGACCTCGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGa < 1:389982/150‑1 (MQ=255) cAGCTACTGGAGGCATTGAGCACCGGCGCCATCGACCTCGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGa < 2:9504/149‑1 (MQ=255) cAGCTACTGGAGGCATTGAGCACCGGCGCCATCGACCTCGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGa > 1:9504/1‑149 (MQ=255) cTGGAGGCATTGAGCACCGGCGCCATCGACCTCGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGa > 2:1066122/1‑143 (MQ=255) cTGGAGGCATTGAGCACCGGCGCCATCGACCTCGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGa < 1:1066122/143‑1 (MQ=255) gAGGCATTGAGCACCGGCGCCATCGACCTCGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGaccac > 1:1396678/1‑150 (MQ=255) gCATTGAGCACCGGCGCCATCGACCTCGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑Tg > 1:400865/1‑150 (MQ=255) aTTGAGCACCGGCGCCATCGACCTCGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGc < 2:112678/150‑1 (MQ=255) aTTGAGCACCGGCGCCATCGACCTCGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGc > 2:1067542/1‑150 (MQ=255) aTTGAGCACCGGCGCCATCGACCTCGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGc > 1:782475/1‑150 (MQ=255) aGCACCGGCGCCATCGACCTCGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCCTGCTCGCGCA‑CGaccag < 1:696135/141‑2 (MQ=255) aGCACCGGCGCCATCGACCTCGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCCTGCTCGCGCA‑CGaccag > 2:696135/1‑140 (MQ=255) cACCGGCGCCATCGACCTCGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCGGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAgtgt < 2:72342/150‑1 (MQ=255) cACCGGCGCCATCGACCTCGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑t > 2:2077890/1‑141 (MQ=255) cACCGGCGCCATCGACCTCGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑t < 1:2077890/141‑1 (MQ=255) ccATCGACCTCGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGAcc > 1:1195339/1‑150 (MQ=255) aTCGACCTCGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTg > 1:2393157/1‑150 (MQ=255) gACCTCGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGaaa < 2:1396678/150‑1 (MQ=255) aCCTCGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAg < 1:2163987/150‑1 (MQ=255) cGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCaa < 2:1846445/150‑1 (MQ=255) ggCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAg > 2:331469/1‑150 (MQ=255) gCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGc < 2:911532/150‑1 (MQ=255) cACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCgt < 2:1283847/150‑1 (MQ=255) aCGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCgtg > 2:569450/1‑150 (MQ=255) gCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCTCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCCAGCGtgtg > 2:441525/1‑150 (MQ=255) gCAGCCGATGCCCCCTCGGTGTTCGCACAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGtgtg > 2:1202531/1‑150 (MQ=255) aGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGc < 2:542006/150‑1 (MQ=255) gCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCCTGCTCGCGCA‑CGacca > 1:2138095/1‑110 (MQ=255) gCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCCTGCTCGCGCA‑CGacca < 2:2138095/110‑1 (MQ=255) cGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCAc < 2:2289049/150‑1 (MQ=255) aTGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCC‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACgg > 1:740591/1‑150 (MQ=255) aTGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGTAGGACCTGAAAGGCAAGCGTGTGGCCACgg < 2:1383469/150‑1 (MQ=255) aTGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAgg > 1:1698058/1‑133 (MQ=255) aTGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACgg > 1:1022420/1‑150 (MQ=255) aTGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGGCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACgg < 2:357624/150‑1 (MQ=255) cTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCgg > 1:30407/1‑150 (MQ=255) cTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGACCGCgg > 2:704998/1‑150 (MQ=255) ggTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGCACCGCCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTg > 1:2389733/1‑150 (MQ=255) tgtTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTAGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGGCACGGGCCGCGGCTGGa > 1:761572/1‑150 (MQ=255) tCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATg < 2:1022420/150‑1 (MQ=255) cccAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCTTAAGACTGGTCGTGTGAACTCC‑AG‑TCACCTTCGTTCATCTGCTGTACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGccc > 1:544093/1‑150 (MQ=255) ccAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGGCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGtgtg > 2:1279585/1‑124 (MQ=255) ccAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGtgtg < 1:1279585/124‑1 (MQ=255) ccAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCAGCATCGGCCTGGTAGTGTGCGAGCG‑TGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCa > 1:2123361/1‑150 (MQ=255) ccAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACAAACGCGGCATCCACCTGGTCGTGGATGTGGA‑GGAGCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCa > 1:2123182/1‑150 (MQ=255) cAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAg < 2:30407/150‑1 (MQ=255) cAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGCGCCGCGGCTGGAATGCCCaa > 2:777950/1‑149 (MQ=255) ggCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCCTGAATGCCCAGTa < 1:575937/150‑1 (MQ=255) aGGCAAGCCTGTGGTCTACCTGGCTGCCGAACGACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACctgct > 2:1343545/1‑150 (MQ=255) tggtatccTGTGGTCGACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACctgctg < 2:602464/144‑1 (MQ=255) gcttgCCTGCGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTgg > 1:1812135/5‑150 (MQ=255) gCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTgg > 2:778191/1‑150 (MQ=255) gCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCGGGTCGTCCGCGAGCAGGGAACACC‑T‑GCTTGTTCGAAATATCCTTAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTgg > 1:1125069/1‑150 (MQ=255) ccTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAAGGCCCAGTACCTGCTGGCCGTa < 2:782475/150‑1 (MQ=255) gtgGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGcc < 2:104369/150‑1 (MQ=255) gTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTg > 2:1896931/1‑150 (MQ=255) gTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTg > 1:1558915/1‑150 (MQ=255) gTCTACCTGGCGGCCGAACAACCCTACCCACGCGGCATCGGCCGGGTCGTGCGCGAGCC‑GGGCCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTg > 2:82294/1‑150 (MQ=255) tACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCAgcct > 2:1068773/1‑148 (MQ=255) gCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCt < 1:197476/150‑1 (MQ=255) gCTGCCGAACAACCCTACCCACGCGGCATCGGCCCGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCt < 1:2014845/150‑1 (MQ=255) tGCCGAACAACCCTTCCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTgg > 1:2087595/1‑150 (MQ=255) tGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTgg > 1:2340210/1‑150 (MQ=255) tGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTgg > 2:1353126/1‑150 (MQ=255) gCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTggg < 1:569450/150‑1 (MQ=255) aacaacCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTa < 1:1061162/115‑1 (MQ=255) aacaacCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCa < 1:1067542/150‑1 (MQ=255) aacaacCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCCCa > 2:718125/1‑150 (MQ=255) acaacCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGGGTGCAAGACCTGACAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAg < 2:324069/150‑1 (MQ=255) ccTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAg > 2:235367/1‑123 (MQ=255) ccTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAg < 1:235367/123‑1 (MQ=255) cTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGc > 1:117924/1‑48 (MQ=255) cTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGc < 2:117924/48‑1 (MQ=255) cccACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGcc > 1:2195196/1‑100 (MQ=255) cccACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGcc < 2:2195196/100‑1 (MQ=255) ccACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGACAAGCGTGTGGGACCTCGACGTAATAATGATTTGCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAGGTAGAAGGAc > 1:542920/1‑150 (MQ=255) cACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGaa < 2:799724/94‑1 (MQ=255) cACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGaa > 1:799724/1‑94 (MQ=255) cACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAGTTACa > 2:2111125/1‑144 (MQ=255) cACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAGTTACa < 1:2111125/144‑1 (MQ=255) aCGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAGTTACAAGGACAt < 2:1558915/150‑1 (MQ=255) cgGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAGTTACAAGGACATTAc < 1:1343545/150‑1 (MQ=255) aTCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAg < 1:2403938/109‑1 (MQ=255) aTCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAg > 2:2403938/1‑109 (MQ=255) aTCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAGTTACAAGGACATTAccccc < 1:1136099/150‑1 (MQ=255) tCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAGTTACAAGGACATTACCCCCg > 2:2245616/1‑150 (MQ=255) cTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAg < 1:916341/125‑1 (MQ=255) cTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAg > 2:916341/1‑125 (MQ=255) cGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAGTTACAAGGACATTACCCCCGCATACGTcaa < 2:2389733/150‑1 (MQ=255) gTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAGTTACAAGGACATTACCCCCGCATACGTcaac < 1:778191/150‑1 (MQ=255) gTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAGTTACAAGGACATTACCCCCGCATACGTcaac < 2:1812135/150‑1 (MQ=255) gcgAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGCAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCCGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAGTTACAAGGACATTACCCCCGCATACGTCAACAATg > 2:1278628/1‑150 (MQ=255) gcgAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCa < 2:1343460/114‑1 (MQ=255) gcgAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAGTTACAAGGACATTAccc > 2:1138617/1‑132 (MQ=255) gcgAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAGTTACAAGGACATTAccc < 1:1138617/132‑1 (MQ=255) gcgAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCACAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCa > 1:1343460/1‑114 (MQ=255) gAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAGTTACAAGGACAt > 1:1383569/1‑125 (MQ=255) gAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAGTTACAAGGACAt < 2:1383569/125‑1 (MQ=255) gAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAGTTACAAGGACATTACCCCCGCATACGTc > 1:2028942/1‑141 (MQ=255) gAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAGTTACAAGGACATTACCCCCGCATACGTc < 2:2028942/141‑1 (MQ=255) | CCAGCTACTGGAGGCATTGAGCACCGGCGCCATCGACCTCGGCCACGCAGCCGATGCCCCCTCGGTGTTCGCCCAGGCCGCAGGCAAGCCTGTGGTCTACCTGGCTGCCGAACAACCCTACCCACGCGGCATCGGCCTGGTCGTGCGCGAGCA‑GGACCACC‑TGGCCAGTGTGCAGGACCTGAAAGGCAAGCGTGTGGCCACGGGCCGCGGCTGGAATGCCCAGTACCTGCTGGCCGTAGCCCTGCAGCAGGCTGGGCTCAGTTACAAGGACATTACCCCCGCATACGTCAACAATGCC > NC_002947/3999599‑3999896 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |