| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,201,754 | A→T | 5.9% | V2022V (GTT→GTA) | PP_3691 ← | DNA helicase‑related protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,201,754 | 0 | A | T | 5.9% | 363.4 / 10.5 | 118 | V2022V (GTT→GTA) | PP_3691 | DNA helicase‑related protein |
| Reads supporting (aligned to +/- strand): ref base A (52/59); new base T (5/2); total (57/61) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.86e-01 | |||||||||||
Only 100 of 120 total aligned reads displayed.
TCATCTGCTCCAAAGTGGTTGTATAGCTCGCCTCAAAAAATCGGTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTACCTCAATGACATCAGCCATCGCTGCATCGACCTTCAGGCGCTCCGCTTCATGCGC > NC_002947/4201606‑4201903 | tcatcTGCTCCAAAGTGGTTGTATAGCTCGCCTCAAAAAATCGGTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTaa < 2:250644/150‑1 (MQ=255) ccccACAGTGGCTCTATAGCTCGCCTCAAAAAATCGGTCTGGATCAACGACCTCGACCATCCTCCGGT‑‑CATCTGGGGGGTTCTAAACCGAGTGCTCCACCGGAACATAATGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGctct < 1:543554/148‑1 (MQ=255) ccAAAGTGGTTGTATAGCTCGCCTCAAAAAATCGGTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTgg > 1:1958379/1‑150 (MQ=255) ccAAAGTGGTTGTATAGCTCGCCTCAAAAAAGCGGTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTTACGGctcaag < 2:138138/150‑4 (MQ=255) cAAAGTGGTTGTATAGCTCGCCTCAAAAAATCGGTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGc > 1:1830377/1‑150 (MQ=255) cAAAGTGGTTGTATAGCTCGCCTCAAAAAATCGGTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGc > 1:613389/1‑150 (MQ=255) aGTGGTTGTATAGCTCGCCTCAAAAAATCGGTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTa < 1:615806/150‑1 (MQ=255) gTTGTATAGCTCGCCTCAAAAAATCGGTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTc > 2:579607/1‑150 (MQ=255) tGTATAGCTCGCCTAAAAAAATCGGTCTGGATCAACCGATTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCaa < 1:726067/150‑1 (MQ=255) tataGCTCGCCTCAAAAAATCGGTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACt > 1:2245238/1‑150 (MQ=255) taGCTCGCCTCAAAAAATCGGTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCa < 2:2203030/150‑1 (MQ=255) aGCTCGCCTCAAAAAATCGGTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCTATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAg < 1:1136710/150‑1 (MQ=255) gCCTCAAAAAATCGGTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGTCAAt > 2:1750357/1‑150 (MQ=255) cTCAAAAAATCGGTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGc > 2:1576510/1‑150 (MQ=255) tCAAAAAATCGGTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTg > 2:754142/1‑126 (MQ=255) tCAAAAAATCGGTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCa > 1:852089/1‑150 (MQ=255) tCAAAAAATCGGTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCa > 1:2262375/1‑150 (MQ=255) tCAAAAAATCGGTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCa > 2:1754448/1‑150 (MQ=255) cAAAAACTCGGTCTGTAGCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTCAGACGGTTAATCCACCTGAACCTCCGGAATCACCACCTCCTCAATGGCTTGGGAGGTATCGTCTCTGGCGTACTTCAACTCAGTCAATGCAc < 1:1750357/150‑1 (MQ=255) aaaaTCGGTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGctc < 2:1560483/120‑1 (MQ=255) aaaaTCGGTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGctc > 1:1560483/1‑120 (MQ=255) ggTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAAACAAGTGCTCGACCGGAACATAAGGAATGACCACTTCCTCCATGGCTTGTGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCATACgaga > 2:459412/1‑147 (MQ=255) ccgatctaTCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGAt < 2:1993797/143‑1 (MQ=255) gTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATc > 1:2136617/1‑150 (MQ=255) tCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCa > 2:1973556/1‑150 (MQ=255) tGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAg < 1:951384/128‑1 (MQ=255) ggATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAt‑‑tt < 1:294373/150‑1 (MQ=255) ggATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAt‑‑tt < 2:1161200/150‑1 (MQ=255) gATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTg < 2:937105/110‑1 (MQ=255) gATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTg > 1:937105/1‑110 (MQ=255) cAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTa < 2:2245238/150‑1 (MQ=255) aaaCTGCTTCGA‑CATCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACNGCCCNGGCGTACTTCAACTNAGGCAATGCACCAGACGGATCAT‑‑TTGCTa < 1:459412/149‑1 (MQ=255) aCTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAAc > 1:794194/1‑117 (MQ=255) aCTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAAc < 2:794194/117‑1 (MQ=255) cTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACgg < 1:264911/150‑1 (MQ=255) tGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGc < 2:1830377/150‑1 (MQ=255) tGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGc < 2:613389/150‑1 (MQ=255) tGCTTCGA‑CAGCCT‑CGGTAGGGTCTGATTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGc > 1:790737/1‑150 (MQ=255) cTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCaa > 1:899951/1‑150 (MQ=255) cTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTCGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCaa > 2:293905/1‑150 (MQ=255) ttCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAAt < 1:1973556/150‑1 (MQ=255) cAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTgg > 2:1157235/1‑150 (MQ=255) cAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTgg < 2:107054/150‑1 (MQ=255) gCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGga < 2:899951/150‑1 (MQ=255) ccT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGgag > 1:577883/1‑150 (MQ=255) tAGGGTCTGCTTCTTTGTAAACCAAGTGCTACACCGGAAAATAACGAATGACGACTTCATGAATGACTTATGCGCGAACTGCTGGGTGTTTCTTGAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTa > 2:1465327/1‑150 (MQ=255) ggTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTacaa < 2:1439469/150‑1 (MQ=255) tCTGCTTCTTTGTAACCCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTgg < 1:486519/136‑1 (MQ=255) tCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTacaa < 2:2283975/148‑1 (MQ=255) tCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTacaa > 1:2283975/1‑148 (MQ=255) cTGCTTGTTTGGAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAg > 2:1674788/1‑150 (MQ=255) ttcttGGTATCCCTAGTGCTCTGTCGGAACATAAGGAATGACCACTCCCTCAATGGCTTGAGCAGCAACGGCTCTGGCGTACCTCAGCTCAGTCAATGCACCAGCCGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAg < 2:734979/150‑1 (MQ=255) tcttTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTgg > 1:1633880/1‑130 (MQ=255) cttTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCt < 1:1157235/150‑1 (MQ=255) aCCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACt > 2:888475/1‑150 (MQ=255) cAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTAc < 2:2136617/150‑1 (MQ=255) cAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGCCAATGCACCAGACGCCTGCTCATTGCT‑‑GACAATTTTGTGGGAAGCTACAACAGCAAGCTGATCCACTAc < 1:2254292/150‑1 (MQ=255) taGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTAcc < 2:425583/149‑1 (MQ=255) aaGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGAc > 2:611699/1‑93 (MQ=255) aaGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGAc < 1:611699/93‑1 (MQ=255) ccGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTAcc > 2:344766/1‑140 (MQ=255) ccGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTAcc < 1:344766/140‑1 (MQ=255) cGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGc > 2:1905882/1‑75 (MQ=255) cGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGc < 1:1905882/75‑1 (MQ=255) ggAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAt‑‑tt > 2:2017271/1‑90 (MQ=255) ggAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAt‑‑tt < 1:2017271/90‑1 (MQ=255) tAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGAc < 1:344908/75‑1 (MQ=255) tAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGAc > 2:344908/1‑75 (MQ=255) tAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTACCTCAATGACATCAGCCATc > 1:900301/1‑150 (MQ=255) aaGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAgg < 1:1194442/61‑1 (MQ=255) aaGGAATGACCACTTCCTCAATGCCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAgg > 2:1194442/1‑61 (MQ=255) ggAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAg > 1:1280563/1‑116 (MQ=255) ggAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAg < 2:1280563/116‑1 (MQ=255) gAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAg < 1:132477/102‑1 (MQ=255) aTGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGAAAAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTACCTCAATGACATCAGCCATCGCTGCa > 1:90144/1‑150 (MQ=255) aCCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCAACTACCTCAATGACATCAGCCATCGCTGCATCg > 1:842776/1‑150 (MQ=255) ccACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTACCTCAATGACATCa > 1:806041/1‑134 (MQ=255) ccACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTACCTCAATGACATCa < 2:806041/134‑1 (MQ=255) cACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAG‑‑GTGCTACGGCCAGTGCGCGAAAAACTACAACAGCAAGCTGATCCACTACCTCAATGACATCAGCCAGCGCTGCATCGAc > 1:168858/1‑150 (MQ=255) ccTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTACCTCAATGACATCAGCCATCGCTGCATCGACCTTCa < 2:577883/150‑1 (MQ=255) cacAATGGCTTGAGCCGTAACGGCTCCGGCGTACGTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCCATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTACCTCAATGACATCAGCCATCGCTGCATCGACCTGCAg > 2:91404/3‑150 (MQ=255) cTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTACCTCAATGACATCAGCCATCGCTGCATCGACCTTCAg < 1:582203/150‑1 (MQ=255) cTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTACCTCAATGACATCAGCCATCGCTGCATCGACCTTCAg > 2:1900173/1‑150 (MQ=255) tCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACg < 2:2326652/72‑1 (MQ=255) tCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACg > 1:2326652/1‑72 (MQ=255) tCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGc < 1:204979/98‑1 (MQ=255) tCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGc > 2:204979/1‑98 (MQ=255) tCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGc > 2:394726/1‑98 (MQ=255) ggCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTACCTCAATGACATCAGCCATCGCTGCATCGACCTTCAGGCGCTc < 2:276367/150‑1 (MQ=255) ccagAGCCGTTACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTACCTCAATGACATCAGCCATCGCTGCATCGACCTTCAGGCGCTCCg > 2:1734003/4‑150 (MQ=255) ccagAGCCGTTACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTACCTCAATGACATCAGCCATCGCTGCATCGACCTTCAGGCGCTCCg > 1:182140/4‑150 (MQ=255) cTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTTGTAGAAGCTACAACAGCAAGCTGATCCACTACCTCAATGACATCAGCCATCGCTGCATCGACCTTCAGGCGCTCCg < 2:790737/150‑1 (MQ=255) ttGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTACCTCAATGACATCAGCCATCGCTGCATCGa < 2:2046115/134‑1 (MQ=255) ttGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTACCTCAATGACATCAGCCATCGCTGCATCGa > 1:2046115/1‑134 (MQ=255) cagAGCCGTTACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTACCTCAATGACATCAGCCATCGCTGCATCGACCTTCAGGCGCTCCGc > 2:505186/3‑150 (MQ=255) cagAGCCGTTACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTACCTCAATGACATCAGCCATCGCTGCATCGACCTTCAGGCGCTCCGc > 2:903899/3‑150 (MQ=255) agAGCCGTTACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTgg > 1:319872/2‑73 (MQ=255) gAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTACCTCAATGACATCAGCCATCGCTGCATCGACCTTCAGGCGCTCCGCtt < 1:1754448/150‑1 (MQ=255) gCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTACCTCAATGACATCAGCCATCGCTGCATCGACCTTCAGGCGCTCCGCTTCa > 1:2182550/1‑150 (MQ=255) ccGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTACCTCAATGACATCAGCCATCGCTGCATCGACCTTCAGGCGCTCCGCTTCAt < 1:395469/150‑1 (MQ=255) | TCATCTGCTCCAAAGTGGTTGTATAGCTCGCCTCAAAAAATCGGTCTGGATCAACTGCTTCGA‑CAGCCT‑CGGTAGGGTCTGCTTCTTTGTAAACCAAGTGCTCCACCGGAACATAAGGAATGACCACTTCCTCAATGGCTTGAGCCGTAACGGCTCTGGCGTACTTCAACTCAGGCAATGCACCAGACGGATCAT‑‑TTGCTACGGCAATTGTGGGAGAAGCTACAACAGCAAGCTGATCCACTACCTCAATGACATCAGCCATCGCTGCATCGACCTTCAGGCGCTCCGCTTCATGCGC > NC_002947/4201606‑4201903 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |