| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,654,924 | G→A | 6.3% | intergenic (+30/‑228) | aceA → / → PP_4118 | isocitrate lyase/membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,654,924 | 0 | G | A | 6.3% | 324.6 / 7.9 | 112 | intergenic (+30/‑228) | aceA/PP_4118 | isocitrate lyase/membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (46/58); new base A (4/3); total (51/61) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.99e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.04e-01 | |||||||||||
Only 100 of 114 total aligned reads displayed.
GTGGCGCACCAGCAGGAAGTGGGCACTGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTAAACCCGCACCTACACTGATCGGGAGGAGACACACATCGG > NC_002947/4654775‑4655069 | gTGGCGCACCAGCAGGAAGTGGGCACTGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCggg < 1:2045566/150‑1 (MQ=255) tGGCGCACCAGCAGGAAGTGGGCACTGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCgggg < 1:705437/150‑1 (MQ=255) gcgcACCAGCAGGAAGTGGGCACTGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCt > 1:487568/1‑150 (MQ=255) cgcACCAGCAGGAAGTGGGCACTGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCtt < 2:2252484/150‑1 (MQ=255) cgcACCAGCAGGAAGTGGGCACTGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCtt < 2:703807/150‑1 (MQ=255) cACCAGCGGGAAGTGGGCACTGGCTACTTCGACGACATGACCACCGGGCTCCAGGGCGGCGCGTCGTCGGTGACTGCACTGACCGGGTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGATGCCGGTGAACCAAGGCCCGGGGCTtgt > 2:118958/1‑150 (MQ=255) cACCAGCAGGAAGTGGGCACTGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTtgt < 2:875874/150‑1 (MQ=255) agcagGAAGTGGGCACTGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGa‑aa < 2:1559055/150‑1 (MQ=255) agcagGAAGTGGGCACTGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTNCCACTGNTAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGn‑aa < 1:1935981/150‑1 (MQ=255) gcagGAAGTGGGCACTGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAg < 1:348017/150‑1 (MQ=255) agGAAGTGGGCACTGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCt > 2:1975453/1‑150 (MQ=255) gAAGTGGGCACTGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGc < 2:115404/137‑1 (MQ=255) gAAGTGGGCACTGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGc > 1:115404/1‑137 (MQ=255) aGTTGGCACTGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCgg < 1:957503/150‑1 (MQ=255) aGTGGGCACTGGCTACTTCGACGACATGCCCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCgg < 2:1073681/150‑1 (MQ=255) aGTGGGCACTGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCgg < 1:445965/150‑1 (MQ=255) ggCACTGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCt > 2:326625/1‑150 (MQ=255) gCACTGGCTACTTCGACGACATGACCACCGTGCTCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTCGTGA‑AAGCTCCGGGCCtt > 1:904508/1‑150 (MQ=255) cACTGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCttt < 2:1929418/150‑1 (MQ=255) cTGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGt < 2:1049917/150‑1 (MQ=255) tGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTtgt < 1:2235162/130‑1 (MQ=255) tGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTtgt > 2:2235162/1‑130 (MQ=255) tGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGtt < 1:326625/150‑1 (MQ=255) cTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGttttt > 2:1476261/1‑150 (MQ=255) tACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTa < 1:2069704/150‑1 (MQ=255) aCTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTAc < 2:1340493/150‑1 (MQ=255) cTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTAcc < 1:1975453/150‑1 (MQ=255) ttCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCGTGTGA‑AAGCTCGGGGCCTTTGTTTTTAccc > 2:582657/1‑150 (MQ=255) tCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCg < 1:1954069/150‑1 (MQ=255) aTGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGTACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAggg > 2:106601/1‑150 (MQ=255) gACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAgggcc < 1:2241202/150‑1 (MQ=255) gACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTAACCGGTTCGACCGCAGGAGAGTAGTTCTAATGATAGTGGGTGGCCGTGGGACAAATGCCCGGCGCTGGTGA‑AGGCTCCGGGCGTGTGTGTTTCGCCGAGCAAgggcc > 2:226706/1‑150 (MQ=255) ccaccGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAgggccgg < 2:1828319/150‑1 (MQ=255) caccGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAgggccggg > 1:1394175/1‑150 (MQ=255) caccGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAgggccggg > 1:1422290/1‑150 (MQ=255) accGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAgggccgggc > 1:1411844/1‑150 (MQ=255) cGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTtgt < 1:1124268/106‑1 (MQ=255) cGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGAGCTT‑TCACAAGCCCCGGGCCttt < 2:610016/123‑1 (MQ=37) cGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGAGCTT‑TCACAAGCCCCGGGCCttt > 1:610016/1‑123 (MQ=37) tGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGAGCTT‑TCACAAGCCCCGGGCCttt > 1:279112/1‑121 (MQ=37) tGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGAGCTT‑TCACAAGCCCCGGGCCttt < 2:279112/121‑1 (MQ=37) aTCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCctgctg < 2:2142068/150‑1 (MQ=255) ccAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGc < 2:2163325/150‑1 (MQ=255) gcgcTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAAttttt < 2:1422290/150‑1 (MQ=255) cTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTAcc < 1:2437414/150‑1 (MQ=255) tGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCa < 1:1196542/150‑1 (MQ=255) cTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCgg < 1:1708815/88‑1 (MQ=255) cTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCCGCTGGCCAATTTTTACCAGCCGTTCACCGTTTcc < 1:2008143/150‑1 (MQ=255) tGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTccg > 2:971112/1‑150 (MQ=255) aCCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTAc > 1:1007419/1‑94 (MQ=255) aCCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTAc < 2:1007419/94‑1 (MQ=255) ccGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTccgccg > 1:1171821/1‑150 (MQ=255) gACCAAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATGTTTACCAGCCGTTCACCGTTTCCGCGGCTACCGt > 2:1309290/1‑150 (MQ=255) aCCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTa > 1:1714287/1‑150 (MQ=255) ccGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCt < 2:2276340/74‑1 (MQ=255) ccGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCt > 1:2276340/1‑74 (MQ=255) cGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGATTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTAtt > 1:158695/1‑150 (MQ=255) agaagaGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTcgc > 1:991850/1‑150 (MQ=255) gaagaGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGTCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGATAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTcgcg < 2:262058/150‑1 (MQ=255) gaagaGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTcgcg < 1:106601/150‑1 (MQ=255) aagaGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCgg < 1:335853/150‑1 (MQ=255) ttCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGtt < 2:124817/65‑1 (MQ=255) ttCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGtt > 1:124817/1‑65 (MQ=255) ttCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTAAAccc > 1:967304/1‑150 (MQ=255) cACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTAAACCCGCa < 2:967304/150‑1 (MQ=255) cACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTAAACCCGCa > 1:1721492/1‑150 (MQ=255) aCTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTTA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTAAACCCGCAc > 1:458934/1‑150 (MQ=255) aCTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCa > 1:164572/1‑103 (MQ=255) aCTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCa < 2:164572/103‑1 (MQ=255) aCTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCGAGTCACCGTTTCCGCCGCTACCGAATTCGCGGGTAAACCCGCAc > 1:1095448/1‑150 (MQ=255) aTAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTaaa > 1:1754221/1‑139 (MQ=255) aTAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTaaa < 2:1754221/139‑1 (MQ=255) aGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTAAACCCGCACCTacac < 1:971112/150‑1 (MQ=255) ttGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTAAACCCGCACCTACACTGATCg < 2:1394175/150‑1 (MQ=255) ccGTTGAACAAAGGCAAGGGGATTGTGA‑AGGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTAAACCCGCACCTACACTGATCGgga < 2:1721492/150‑1 (MQ=255) gTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAgggccgg < 1:1767176/64‑1 (MQ=255) gTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAgggccgg > 2:1767176/1‑64 (MQ=255) gAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAAtttt > 1:592609/1‑78 (MQ=255) gAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAAtttt < 2:592609/78‑1 (MQ=255) gAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTAAACCCGCACCTACACTGATCGGGAGgaga < 2:1714287/150‑1 (MQ=255) gAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTAAACCCGCACCTACACTGATCGGGAGgaga < 1:1476261/150‑1 (MQ=255) aaaCAAAGGCCCGGAGCTT‑TCACAAGCCCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTAAACCCGCACCTACACTGATCGGGAGgaga > 1:1866027/2‑150 (MQ=21) aaaCAAAGGCCCGGAGCTT‑TCACAAGCCCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTAAACCCGCACCTACACTGATCGGGAGgaga > 2:1412509/2‑150 (MQ=25) aaCAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTc > 2:1453579/1‑97 (MQ=255) aaCAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTc < 1:1453579/97‑1 (MQ=255) aaCAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCgg < 2:1734271/117‑1 (MQ=255) aaCAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTAAACCCGCACCTACACTGATCGGGAGgaga > 2:1378352/1‑149 (MQ=255) aaCAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTAAACCCGCACCTACACTGATCGGGAGgaga < 1:1378352/149‑1 (MQ=255) aCAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTAAACCCGCACCTACACTGATCGGGAGGAGaca > 1:763233/1‑150 (MQ=255) aCAAAGGCCCGGAGCTTTCAC‑AAGCCCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTAAACCCGCACCTACACTGATCGGGAGGAGaca < 1:1412509/150‑1 (MQ=25) aaaGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTAc < 2:109169/77‑1 (MQ=255) aaaGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTAc > 1:109169/1‑77 (MQ=255) aaGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCAcc < 2:266931/88‑1 (MQ=255) aGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTAAACCCGCACCTACACTGATCGGGAGGAGAcacaca > 2:467352/1‑150 (MQ=255) gCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCAc > 1:1480631/1‑84 (MQ=255) gCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCAc < 2:1480631/84‑1 (MQ=255) ccGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAgggc > 2:353139/1‑48 (MQ=255) ccGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAgggc < 1:353139/48‑1 (MQ=255) ccGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTAAACCCGCACCTACACTGATCGGGAGGAGACACACATCgg > 2:485347/1‑150 (MQ=255) ccGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTAAACCCGCACCTACACTGATCGGGAGGAGACACACATCgg > 1:2394817/1‑150 (MQ=255) | GTGGCGCACCAGCAGGAAGTGGGCACTGGCTACTTCGACGACATGACCACCGTGATCCAGGGCGGCGCTTCGTCGGTGACTGCACTGACCGGTTCGACCGAAGAAGAGCAGTTCCACTGATAGTGGGTTGCCGTTGAACAAAGGCCCGGGGCTTGTGA‑AAGCTCCGGGCCTTTGTTTTTACCCGAGAAAGGGCCGGGCCTGCTGGCCAATTTTTACCAGCCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGTAAACCCGCACCTACACTGATCGGGAGGAGACACACATCGG > NC_002947/4654775‑4655069 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |